Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17616 676 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G03100 306 / 7e-93 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G69290 164 / 2e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68980 99 / 3e-21 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09650 93 / 2e-19 CRM3, HCF152 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G11690 62 / 9e-10 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G65560 53 / 6e-07 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G38730 50 / 3e-06 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02060 49 / 8e-06 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G19290 49 / 1e-05 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G212400 [exp] 313 / 1e-95 AT1G03100 1044 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G095800 [exp] 153 / 5e-39 AT1G69290 860 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G085300 [exp] 77 / 3e-14 AT3G09650 961 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 59 / 8e-09 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G040200 [exp] 54 / 3e-07 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G139300 [exp] 53 / 8e-07 AT5G01110 275 / 1e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G257300 [exp] 51 / 2e-06 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G131400 [exp] 50 / 3e-06 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G141800 [exp] 50 / 4e-06 AT2G06000 588 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037275 [exp] 701 / 0 AT4G17616 560 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007353 [exp] 274 / 1e-81 AT1G03100 1003 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020775 [exp] 273 / 1e-81 AT1G03100 961 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035686 [exp] 206 / 1e-60 AT4G17616 176 / 2e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037077 [exp] 135 / 7e-33 AT1G69290 827 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015059 [exp] 97 / 2e-20 AT3G09650 969 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036908 [exp] 53 / 7e-07 AT1G69290 365 / 1e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003657 [exp] 52 / 2e-06 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1) Lus10039056 [exp] 51 / 2e-06 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008650 [exp] 51 / 3e-06 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.003G084400.1 pacid=42786047 polypeptide=Potri.003G084400.1.p locus=Potri.003G084400 ID=Potri.003G084400.1.v4.1 annot-version=v4.1 ATGGCACTAATTTTTTCAAGAAAAATCCCATTGAGCTATGCATTTGGAGTCTTTGTGCCTTCAGCTATTCAGAAGACTGCCTTGATTGCAGATCACAGTG GAGAATTTTTTTCCAAAAGAGTCTTTGGACAATATCAGCTTGTAGCTCTCCAACATTTTTCGAGTGGTAGTGTTAGTCAGCCTGGGAGGATATGTTGGAG AGGTTCCTCTAATGTTGTTCTTTTGAGGAAGCTTGAAATTGCATTGCGGGAGCATCAAGTAGATGAAGCTTGGGTAACTTTTATTGACTTCAAGAAACTA TATGGCTTTCCTACGGGTTCCATGGTGAACATGTTAATTTCTCGACTTTCCTATTCATCAGACCACCACTGGTTGCAAAAAGCATGTGATTTGGTCTTCT TAATATTGAAAGAAAAGCCTGGTTTGCTTCAGTTTCCAGTCCTGACAAAGCTCTCAATCTCCTTAGCTAGAGCACAGATGCCTGTTCCTGCCTCTATGAT TCTAAGGGTGATGCTAGAGAGGGAGAATATGCCCCCACTAACTATACTATGGTCAGTGGTTTCACACATGGTGAAGACGGAGATTGGAGCATGTCTAGCA TCAAATTTCTTGGTTCAGATGTGTGATTGTTTTCTACATTTAAGCGCAAAAGGAAGTGTTCGTGCCAAAGTGGTAAAACCTGATGCAATGATATTCAACC TTGTTCTTGATGCTTGTGTGAAGTTCAAATCATCTCTTAAAGGCCAAGAAATAGTTGAGTTGATGTCAAAGGCGGGTGTTATTGCTGATGCACACTCGGT CATTATTTTTTCCCAGATCCATGAAATGAATGGTCAAAGGGATGAGATCAAGAAATTGAAGGATCATGTTGATGAAGTGGGTGCTCCTTTTATTGGTTAT TATTGTCAGTTCTATGATAGTTTGTTGAAATTGCACTTTAAATTCGATGACATCGATTCTGCTGCACAGCTTTTGTTGGATATGCATAAATTCCAGGAGT CTGTTCCCAATAAAAAACTTAGGATGGACCAAGAAAAGCGTCTCCTTGTTCCAATTGGATCTAACAATCTCAAGACTGGCTTGAAGATACAGGTTATGCC AGAGTTATTGCAGAAGGATTCTATCCTCACAGTGAAACATAAACAAGAGCTTGTAATGTTTAGGAGTGGAAAGCTTCTCCTTAGTAACAGAGCCCTGGCA AAGCTTGTAAATGGATACAGAAGACATGGGAGAACTACTGATCTTTCAAAGCTTTTACTTTGCATGCAACAGGACTTCCATGTGCTTGGCCAGTCCAGTT TTTGCTCTGATGTGATTGATGCTTGCATTCGCATAGGTTGGCTGGAAATGGCCCATGACATCTTGGATGACATGGATGCAGCTGGGGCTCCCATAGGCTC TACCCTGCATATGGCACTCTTAACAGCATATTATTGTAGAGAGATGTTCAAAGAAGCAAAGGCACTGCTACGAAAAATGAGGAAGGCTGGTTTTGTTGTA AATTTGTCTGATGAGATGGTTGCCACTGCTTGTCTTTCAGAAGCAGCTAATAATGCATCATCTTCGTCTAGTAAATCAGATCTGATAGACTTTTTAATCC GAGAAATGAGAGAGGAAGAGAAGGCCATTCCTTCCGTGGTTTATGAATTAAATTCTTCCGTTTACTACTTTTGCAAGGCCAAAATGATGGAGGATGCATT GAAGACGTATAAAAGAATGCAACACATGAAAATCCAACCAACAGTGCAAACTTTTTCTTATCTGATCGATGGGTTTTCTTCTTTGGGTATGTATCGAGAT ATCACAATCTTGTGGGGGGATATCAAGAGGAACGTGGGTAGCAAGGACTTAGAGGTGAGTAGGGATCTCTATGAGGTTTTGCATTTGAACTTTCTCCGAG GAGGTTATTTTGAGAGAGCAATGGAGGTCATTGGTTATATGAAAGAGCGTAATATGTACTGCGACAAGTGGATGTACAAAGATGAGTTCTTGAAGCTTCA TAAGAATCTATATCGGAGTTTAAAAGCATCAGAGGCAAGAACAGAGGCTCAAAGCAAGAGGCTTGAGCATGTCAAGGCATTTAGGAAATGGGTTGGCATT GATTGA
AA sequence Show only first row Show all	>Potri.003G084400.1 pacid=42786047 polypeptide=Potri.003G084400.1.p locus=Potri.003G084400 ID=Potri.003G084400.1.v4.1 annot-version=v4.1 MALIFSRKIPLSYAFGVFVPSAIQKTALIADHSGEFFSKRVFGQYQLVALQHFSSGSVSQPGRICWRGSSNVVLLRKLEIALREHQVDEAWVTFIDFKKL YGFPTGSMVNMLISRLSYSSDHHWLQKACDLVFLILKEKPGLLQFPVLTKLSISLARAQMPVPASMILRVMLERENMPPLTILWSVVSHMVKTEIGACLA SNFLVQMCDCFLHLSAKGSVRAKVVKPDAMIFNLVLDACVKFKSSLKGQEIVELMSKAGVIADAHSVIIFSQIHEMNGQRDEIKKLKDHVDEVGAPFIGY YCQFYDSLLKLHFKFDDIDSAAQLLLDMHKFQESVPNKKLRMDQEKRLLVPIGSNNLKTGLKIQVMPELLQKDSILTVKHKQELVMFRSGKLLLSNRALA KLVNGYRRHGRTTDLSKLLLCMQQDFHVLGQSSFCSDVIDACIRIGWLEMAHDILDDMDAAGAPIGSTLHMALLTAYYCREMFKEAKALLRKMRKAGFVV NLSDEMVATACLSEAANNASSSSSKSDLIDFLIREMREEEKAIPSVVYELNSSVYYFCKAKMMEDALKTYKRMQHMKIQPTVQTFSYLIDGFSSLGMYRD ITILWGDIKRNVGSKDLEVSRDLYEVLHLNFLRGGYFERAMEVIGYMKERNMYCDKWMYKDEFLKLHKNLYRSLKASEARTEAQSKRLEHVKAFRKWVGI D

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17616			Pentatricopeptide repeat (PPR)...		Potri.003G084400 [exp]	0	1
AT2G43280	FAR1_related		Far-red impaired responsive (F...		Potri.002G239300 [exp]	2.00	0.7859
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.008G033200 [exp]	12.64	0.7990
AT3G57450			unknown protein		Potri.012G032500 [exp]	26.53	0.7574
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Potri.006G015400 [exp]	36.12	0.6964	Pt-RAB11.16
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Potri.010G040000 [exp]	39.49	0.6336	ZCW32.2
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.015G013300 [exp]	41.74	0.7353
					Potri.001G087701 [exp]	42.07	0.6699
AT4G27730		ATOPT6	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.012G019500 [exp]	44.27	0.7338
AT4G32285			ENTH/ANTH/VHS superfamily prot...		Potri.006G066900 [exp]	50.64	0.7325
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Potri.002G078600 [exp]	51.28	0.7319	ACO1

Compare expression of checked genes

Potri.003G084400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.