Plant FIBer expression Database

Potri.003G084900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G17640 379 / 2e-133 CKB2 casein kinase II beta chain 2 (.1.2)
AT5G47080 372 / 1e-130 CKB1 casein kinase II beta chain 1 (.1.2.3.4)
AT2G44680 352 / 7e-123 CKB4 casein kinase II beta subunit 4 (.1.2)
AT3G60250 322 / 4e-111 CKB3 casein kinase II beta chain 3 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G149600
[exp]
454 / 3e-163 AT5G47080 390 / 7e-138 casein kinase II beta chain 1 (.1.2.3.4)
Potri.014G052100
[exp]
364 / 3e-127 AT2G44680 423 / 1e-150 casein kinase II beta subunit 4 (.1.2)
Potri.002G139900
[exp]
361 / 3e-126 AT2G44680 419 / 8e-149 casein kinase II beta subunit 4 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042859
[exp]
375 / 8e-132 AT2G44680 451 / 3e-162 casein kinase II beta subunit 4 (.1.2)
Lus10028159
[exp]
367 / 1e-128 AT2G44680 449 / 2e-161 casein kinase II beta subunit 4 (.1.2)
Lus10028160
[exp]
365 / 1e-127 AT2G44680 455 / 2e-163 casein kinase II beta subunit 4 (.1.2)
Lus10028161
[exp]
364 / 2e-127 AT2G44680 454 / 5e-163 casein kinase II beta subunit 4 (.1.2)
Lus10042861
[exp]
363 / 4e-127 AT2G44680 447 / 2e-160 casein kinase II beta subunit 4 (.1.2)
Lus10042860
[exp]
348 / 5e-122 AT5G47080 414 / 2e-148 casein kinase II beta chain 1 (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01214 CK_II_beta Casein kinase II regulatory subunit
Representative CDS sequence
>Potri.003G084900.1 pacid=42785186 polypeptide=Potri.003G084900.1.p locus=Potri.003G084900 ID=Potri.003G084900.1.v4.1 annot-version=v4.1
ATGTACAGAGAGCGAGGGATTGGCGGGTCCAAGGCGGAGGTGGATCATCGAAAGCATCGGATTAGCGATGTCCTCGATAAGCATCTCGACAGATCCACAC
CGTCCAGTTCCAGACCCACCAACGGCAAGGATTTGTTTCTTTTCATGAACAAGCAACAACCACCTGATTACAACAATACTGACCATCTCCTCTCTAAAGA
CAACAACGCCTCCGATGTGGAATCTGAAACGGACAGTGAAGAGTCCGATGTGAGTGGGTCAGAAGGAGATGAGACGACGTGGATCTCATGGTTCTGTAAT
CTAAGAGGAAATGAATTCTTTTGTGAAGTGGATGATGATTACATACAAGATGACTTTAACCTCTGTGGGTTAAGCACTCAAGTTCCTTATTATGACTATG
CTCTTGATTTGATTTTGGATGTCGAGTCTTCGCATGGTGATATGTTCACAGAGGAACAAAATGAGTTGGTTGAATCTGCAGCAGAGATGCTTTATGGACT
GATTCATGCTCGATACATATTGACCAGCAAGGGGATGGCAGCTATGCTGGACAAGTACAAGAACTATGACTTTGGGAGATGCCCAAGAGTTCACTGCTGT
GGACAACCTTGCCTTCCTGTTGGTCAATCAGACATTCCTCGGTCAAGCAATATTAAAATATGCTGCCCCAAGTGTGACGATATATACTACCCACGTTCCA
AGTATCAAGGCAACATCGATGGAGCATATTTTGGGACGACATTTCCTCACCTGTTCTTGATGACTTATGGGCATCTCAAGCCACAAAAGTTTTCACGCCT
GGTTGAGCAGATGGAAGTTTCTGTGGCCCACAACGCATTAGTTTGA
AA sequence
>Potri.003G084900.1 pacid=42785186 polypeptide=Potri.003G084900.1.p locus=Potri.003G084900 ID=Potri.003G084900.1.v4.1 annot-version=v4.1
MYRERGIGGSKAEVDHRKHRISDVLDKHLDRSTPSSSRPTNGKDLFLFMNKQQPPDYNNTDHLLSKDNNASDVESETDSEESDVSGSEGDETTWISWFCN
LRGNEFFCEVDDDYIQDDFNLCGLSTQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHARYILTSKGMAAMLDKYKNYDFGRCPRVHCC
GQPCLPVGQSDIPRSSNIKICCPKCDDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKFSRLVEQMEVSVAHNALV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G17640 CKB2 casein kinase II beta chain 2... Potri.003G084900
[exp]
0 1
AT5G50720 ATHVA22E ARABIDOPSIS THALIANA HVA22 HOM... Potri.012G101600
[exp]
3.16 0.7232
AT5G18420 unknown protein Potri.004G092400
[exp]
25.59 0.7366
AT1G76660 unknown protein Potri.005G260000
[exp]
25.63 0.7250
AT1G12000 Phosphofructokinase family pro... Potri.004G003800
[exp]
30.39 0.7220
AT4G23650 CDPK6, CPK3 Calcium dependent protein kina... Potri.001G097400
[exp]
44.74 0.7227 CPK3,CDPK5.4
AT5G06610 Protein of unknown function (D... Potri.016G062400
[exp]
45.16 0.6890
AT5G22920 CHY-type/CTCHY-type/RING-type ... Potri.006G121801
[exp]
60.21 0.6855
AT4G35100 SIMIP, PIP3A, P... PLASMA MEMBRANE INTRINSIC PROT... Potri.009G136600
[exp]
65.87 0.6799
AT2G43980 ATITPK4 "inositol 1,3,4-trisphosphate ... Potri.017G007500
[exp]
86.71 0.6858
Potri.011G008676
[exp]
90.00 0.6865

Potri.003G084900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.