Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17080 417 / 3e-141 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT2G35170 387 / 1e-129 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G21920 299 / 2e-96 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G77660 279 / 1e-88 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT2G41210 105 / 1e-23 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT1G60890 103 / 4e-23 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT3G56960 103 / 6e-23 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT1G21980 100 / 4e-22 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT1G77740 94 / 4e-20 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT3G09920 93 / 1e-19 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G149400 [exp] 664 / 0 AT4G17080 395 / 2e-132 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.002G140000 [exp] 439 / 5e-150 AT4G17080 373 / 1e-124 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.014G052300 [exp] 416 / 5e-141 AT4G17080 348 / 2e-115 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.005G175800 [exp] 297 / 2e-95 AT1G21920 372 / 3e-126 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.002G085900 [exp] 294 / 3e-94 AT1G21920 396 / 7e-136 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.001G211200 [exp] 106 / 6e-24 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.019G015768 [exp] 97 / 6e-21 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.016G036800 [exp] 97 / 7e-21 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.003G019100 [exp] 97 / 9e-21 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028158 [exp] 426 / 3e-144 AT4G17080 508 / 1e-176 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10042858 [exp] 339 / 1e-110 AT4G17080 439 / 3e-150 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10028062 [exp] 297 / 4e-95 AT1G77660 442 / 2e-153 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10008325 [exp] 287 / 5e-91 AT1G77660 438 / 8e-152 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10025636 [exp] 101 / 4e-22 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10018200 [exp] 100 / 4e-22 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10001377 [exp] 100 / 7e-22 AT1G60890 1044 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10015456 [exp] 100 / 8e-22 AT1G60890 1036 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10029661 [exp] 100 / 1e-21 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10020821 [exp] 95 / 3e-20 AT1G60890 935 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0251 [poplar] [flax] MORN PF02493 [poplar] [flax] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Potri.003G085000.1 pacid=42785980 polypeptide=Potri.003G085000.1.p locus=Potri.003G085000 ID=Potri.003G085000.1.v4.1 annot-version=v4.1 ATGCATCAAAAGAAATCTGAAACACTTTTTATCACAAAACAAAGCAGAGGAAGCAGAGGAAGAAGAGTTTTCAATCCTCCTTTACCTCTCTTTGATCCTT CAATCCATCAACTTGAAAAACAACAACAAATACGAAGACAAAAGCAATCCGAACCAAACCCACAAAACCAACCTCTTCTTCAAATCCAAATCCCACCACC CACGTCACCAAACCCACCTCCACTGAACCACCAACCTTACTTTCAATCCTACCATGAACAAGAACAAACCTTACCTTGTCAAATAATCCTTCAACAACCC AAAAACCACCTTATTTCAACACCTCACAAGCGACTAACAGTTATGGCTCAGTCACCACCTTCTTCTCTCTCTCACTCTCCTACGCTTTCCTCTCTCCATG GCAACCTTGACCAATCACGTTTTCATAAAAAAACAATTTTGAATACTATTACCTCCCCATTTACTACTCAATTATCTATCAAGACTGTAGTTCACAGAGT CCTTTTCCATTTCAGCCATGCTCGTTTGCTTTGTGTGCATTTGAGGGTTTTGATTCTTTTAATTTTGCCTTCTCTTTACTTCTTTATATCAAATCATCAT CGCTTGTTTATCATAAATTTGCTTTTCAGTATTGCTTTCTTAATTACCCTTTTAGTATGTCTCAATCTTGTGCTTCCTCGCTTGCCTTCAATTCGTTTAC TTGTAACTCGTTCACTTCCAAACAAGCTCAAGTCAACACCTTTCCCTACAGAAGCTTCAAATCCTGTGGTTTGGTCAATTGGGTCTAAGCCAAAAAAAGA AAACAAGCCATATTCAGGGTCATGGGTTCAGGTTTATAGTAATGGTGATGTTTATGAGGGTGAATTTCATGAAGGTAAGTGTTCAGGGAGTGGGGTTTAT TACTATTACATGAGTGGGAGATATGAGGGTGATTGGGTGGATGAGAAGTATGATGGCTGTGGAGTGGAAACATGGGCTAAAGGGAGCAGGTATAGAGGGC AGTATAGGCAGGGTTTGAGGCATGGAATTGGGGTTTATAGGTTTTATACAGGTGATGTTTATGCTGGTGAGTGGTGTAATGGGCAATGCCACGGGTGTGG TGTTCATACTTGTGAGGATGGGAGTAAGTATGTCGGGGAGTTCAAGTGGGGTGTTAAGCATGGGCTTGGTCATTACCATTTCAGAAACGGGGACATGTAT GCTGGGGAATATTTTGCAGATAAGATGCATGGTTTTGGAGTCTATCAGTTTGGAAATGGACATCGGTATGAAGGAGCATGGCATGAGGGAAGGAGGCAAG GGCTTGGTATGTACACTTTCAGAAATGGAGAAACACAATCTGGTCACTGGCAAAATGGGATTCTTGATGTTTCTACTGCAGAGAATGGCAACCCTGGATC TCCAAAGGCTACTAGTCATCCCAAAGTTCGTAGTGCTGTCCAGGAAGCAAGGCGATCTGCTGAGAAAGCATATGATGTGGCAAGGATAGAAGAGAGAGTG AACAAAACTGTTAAATCTGCCAACAAATCAGCCAATGCTGCAAGAGTTGCAGCAGTAAAGGCTGTCCAAAGACAAATGCACCACCATAACAGTGATGATG TTCCATCTCCTTTTGTTTAA
AA sequence Show only first row Show all	>Potri.003G085000.1 pacid=42785980 polypeptide=Potri.003G085000.1.p locus=Potri.003G085000 ID=Potri.003G085000.1.v4.1 annot-version=v4.1 MHQKKSETLFITKQSRGSRGRRVFNPPLPLFDPSIHQLEKQQQIRRQKQSEPNPQNQPLLQIQIPPPTSPNPPPLNHQPYFQSYHEQEQTLPCQIILQQP KNHLISTPHKRLTVMAQSPPSSLSHSPTLSSLHGNLDQSRFHKKTILNTITSPFTTQLSIKTVVHRVLFHFSHARLLCVHLRVLILLILPSLYFFISNHH RLFIINLLFSIAFLITLLVCLNLVLPRLPSIRLLVTRSLPNKLKSTPFPTEASNPVVWSIGSKPKKENKPYSGSWVQVYSNGDVYEGEFHEGKCSGSGVY YYYMSGRYEGDWVDEKYDGCGVETWAKGSRYRGQYRQGLRHGIGVYRFYTGDVYAGEWCNGQCHGCGVHTCEDGSKYVGEFKWGVKHGLGHYHFRNGDMY AGEYFADKMHGFGVYQFGNGHRYEGAWHEGRRQGLGMYTFRNGETQSGHWQNGILDVSTAENGNPGSPKATSHPKVRSAVQEARRSAEKAYDVARIEERV NKTVKSANKSANAARVAAVKAVQRQMHHHNSDDVPSPFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17080			Histone H3 K4-specific methylt...		Potri.003G085000 [exp]	0	1
AT3G59910			Ankyrin repeat family protein ...		Potri.017G001300 [exp]	28.98	0.6852
					Potri.005G118650 [exp]	39.94	0.7029
AT1G27300			unknown protein		Potri.001G057700 [exp]	40.02	0.7320
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.005G131200 [exp]	42.35	0.6786	XLG.1
AT1G30760			FAD-binding Berberine family p...		Potri.006G128900 [exp]	55.22	0.6838
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Potri.002G081800 [exp]	67.19	0.6378	Pt-ALDH3.1
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Potri.016G037300 [exp]	76.83	0.6773	Pt-ORG2.3
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Potri.008G005101 [exp]	86.08	0.6325
AT1G04300			TRAF-like superfamily protein ...		Potri.008G163300 [exp]	94.23	0.6891
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Potri.010G217900 [exp]	94.95	0.6698

Compare expression of checked genes

Potri.003G085000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.