Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-NPSN11.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35190 392 / 3e-139 NSPN11, ATNPSN11, NPSN11 novel plant snare 11 (.1) AT3G17440 324 / 2e-112 ATNPSN13, NPSN13 novel plant snare 13 (.1.2) AT1G48240 314 / 2e-108 ATNPSN12 novel plant snare 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G149200 [exp] 462 / 9e-167 AT2G35190 389 / 4e-138 novel plant snare 11 (.1) Potri.010G001900 [exp] 328 / 3e-114 AT3G17440 429 / 8e-154 novel plant snare 13 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003004 [exp] 384 / 6e-136 AT2G35190 366 / 5e-129 novel plant snare 11 (.1) Lus10017116 [exp] 315 / 2e-108 AT3G17440 410 / 6e-146 novel plant snare 13 (.1.2) Lus10018338 [exp] 305 / 7e-104 AT3G17440 375 / 2e-131 novel plant snare 13 (.1.2) Lus10011034 [exp] 290 / 2e-99 AT2G35190 274 / 2e-93 novel plant snare 11 (.1) Lus10000163 [exp] 66 / 4e-14 AT3G17440 103 / 3e-29 novel plant snare 13 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [poplar] [flax] Traffic PF03908 [poplar] [flax] Sec20 Sec20
Representative CDS sequence Show only first row Show all	>Potri.003G085200.1 pacid=42787270 polypeptide=Potri.003G085200.1.p locus=Potri.003G085200 ID=Potri.003G085200.1.v4.1 annot-version=v4.1 ATGGATCCTTTATCGTCGATCAGTGAAGAGCTAGCAGAGATCAATGGACAGATCGCCGATATTTTTCGAGCTTTATCAAATGGGTTCCAGAAATTGGAGA AGATTAAGGATGTCAATAGACAGAGTAGGCAGCTGGAAGAACTTACGGGGAAGCTGCGGGAGTGTAAGAGGCTTATCAAAGAGTTTGACAGAGAAATGAA GGATATGGAGAGTAGAAATGATCCAGACACCAACAAAATGCTGAATGAGAAAAAGCAGTCAATGATCAAAGAGTTGAATTCATATGTTGCTCTTAAAAAA CAATATGCGACCAATCTTGAAAACAACAAGAGAGTTGATCTCTTTGATGGGCCCAATGAAGAGTTACATGATGACAATGTGTTGCTAGCTTCGTCTATGA CAAACCAACAGCTAGTGGATCATGGAAATCAGATGATGGATGAGACTGATCAGGCAATTGAGAGGGGAAAAAAGGTTGTTCAAGACACCATCAATGTTGG AACAGAAACTGCAGCAGCTCTTAAGGCTCAGACTGAACAAATGAGTAGGATTGTTAATGAGCTCGACTCTATCCATTTCTCAATCAAGAAAGCTTCGCAA TTGGTGAAGGAAATTGGTAGGCAGGTTGCAACTGACAAGTGCATTATGGCATTACTCTTCCTTATTGTTGTTGGAGTCATAGCAATCATTATTGTGAAGC TCGTGAACCCAAGCAACAAGGACATTCGGGATATTCCAGGATTAGCCCCGCCTGCACCGTCTCGCAGATTACTTTGGATTCCTAATCAAGAAACAAGCTA G
AA sequence Show only first row Show all	>Potri.003G085200.1 pacid=42787270 polypeptide=Potri.003G085200.1.p locus=Potri.003G085200 ID=Potri.003G085200.1.v4.1 annot-version=v4.1 MDPLSSISEELAEINGQIADIFRALSNGFQKLEKIKDVNRQSRQLEELTGKLRECKRLIKEFDREMKDMESRNDPDTNKMLNEKKQSMIKELNSYVALKK QYATNLENNKRVDLFDGPNEELHDDNVLLASSMTNQQLVDHGNQMMDETDQAIERGKKVVQDTINVGTETAAALKAQTEQMSRIVNELDSIHFSIKKASQ LVKEIGRQVATDKCIMALLFLIVVGVIAIIIVKLVNPSNKDIRDIPGLAPPAPSRRLLWIPNQETS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Potri.003G085200 [exp]	0	1	Pt-NPSN11.1
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Potri.019G130000 [exp]	2.00	0.9578
AT5G05010			clathrin adaptor complexes med...		Potri.012G125500 [exp]	3.00	0.9638
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Potri.001G149200 [exp]	3.46	0.9531
AT1G14020			O-fucosyltransferase family pr...		Potri.008G090600 [exp]	4.89	0.9514
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Potri.010G044700 [exp]	6.00	0.9576
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.002G151400 [exp]	7.21	0.9478
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Potri.013G018800 [exp]	8.00	0.9560
AT4G14960		TUA6	Tubulin/FtsZ family protein (....		Potri.001G289500 [exp]	8.36	0.9476	TUA2.1
AT3G45230			hydroxyproline-rich glycoprote...		Potri.004G210300 [exp]	8.36	0.9362
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.005G060800 [exp]	10.00	0.9537

Compare expression of checked genes

Potri.003G085200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.