Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47070 472 / 7e-166 Protein kinase superfamily protein (.1) AT4G17660 420 / 1e-145 Protein kinase superfamily protein (.1) AT2G28940 373 / 4e-126 Protein kinase superfamily protein (.1.2) AT3G09830 363 / 8e-123 Protein kinase superfamily protein (.1.2) AT5G03320 347 / 2e-116 Protein kinase superfamily protein (.1) AT5G15080 345 / 6e-115 Protein kinase superfamily protein (.1) AT3G28690 341 / 7e-115 Protein kinase superfamily protein (.1.2.3) AT2G39110 341 / 3e-114 Protein kinase superfamily protein (.1) AT2G02800 338 / 3e-113 Kin2, APK2B protein kinase 2B (.1.2) AT2G28930 338 / 4e-113 APK1B protein kinase 1B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G149100 [exp] 647 / 0 AT5G47070 496 / 7e-176 Protein kinase superfamily protein (.1) Potri.014G052700 [exp] 518 / 0 AT5G47070 431 / 2e-149 Protein kinase superfamily protein (.1) Potri.009G031500 [exp] 378 / 2e-128 AT2G28940 565 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G225300 [exp] 372 / 3e-126 AT2G39110 538 / 0.0 Protein kinase superfamily protein (.1) Potri.001G240500 [exp] 372 / 4e-126 AT2G28940 563 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G036800 [exp] 368 / 6e-125 AT3G09830 537 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G126000 [exp] 363 / 1e-122 AT3G09830 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G033800 [exp] 348 / 4e-116 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 347 / 9e-116 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040135 [exp] 514 / 0 AT5G47070 456 / 3e-160 Protein kinase superfamily protein (.1) Lus10001088 [exp] 511 / 0 AT5G47070 455 / 4e-160 Protein kinase superfamily protein (.1) Lus10038711 [exp] 365 / 4e-123 AT3G09830 547 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037980 [exp] 362 / 2e-121 AT3G09830 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016536 [exp] 358 / 2e-120 AT2G28940 576 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040804 [exp] 352 / 9e-118 AT2G28940 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030668 [exp] 348 / 4e-116 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 347 / 1e-115 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10012850 [exp] 344 / 2e-115 AT2G02800 614 / 0.0 protein kinase 2B (.1.2) Lus10023794 [exp] 339 / 3e-114 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.003G085300.3 pacid=42786024 polypeptide=Potri.003G085300.3.p locus=Potri.003G085300 ID=Potri.003G085300.3.v4.1 annot-version=v4.1 ATGAAGTGTTTCTATATTTTTAAGGATAAATCTAAGAACATGAAAGGGAAAGCAAATTTAGCCCCAGAATTGGGAGGCCAACGCAAATCAGATATTCCAT CTTCGAGTCGTACAGCGAAGTCCTTACCATGTCCAAGAAGCATACCTGAATTGTACAACGTGAGCGAGCACAATTTGCAAGTTTTCAGTTTTCAAGAGCT TAGAAAGGCTACAACTGGTTTTAACAGATTGCTTACGATTGGAGAAGGTGGTTTTGGGAGTGTGTACAAGGGAACAATCAGACCTGCTAATGGTCAAGGG GATCCTATAGTGGTTGCCATAAAAAAGCTCAACAACCACGGCTTGCAGGGTCATAAACAATGGCTTGCAGAAGTTCAATTTCTTCGGGTTGTCAGTCACC CAAACGTAGTGAAACTTATAGGTTACTGCTCCGTAGATGGTGAAAGAGGGATCCAACGGCTACTGGTTTATGAATATATGCCTAAGGGAAGCTTAGAAGA TCATCTTTTCAGAAGAGGTCTGCCCAATCTGCCATGGAGGAAAAGATTAGAGATAATCCTTGGTGCTGCTGAAGGATTGGCTTACTTGCATGGAGGAATG GAAGTCCAGGTAATTTATAGAGATTTCAAATCCTCGAATGTTCTTTTGGATGAGGACTTTAAGCCGAAGCTCTCAGATTTTGGGCTTGCTAGAGAAGGGC CGACTGGTGATCGGACTCATGTATCCACTGCGGTGCTTGGTACATATGGATATGCTGCTCCTGAATATCTTGAAACAGGCCACCTCACCAGTCAAAGTGA TATATGGAGCTTCGGTGTGGTTCTCTACGAAATCCTTACTGGCAGGCGAACTGTGGAAACAAACCGCCCTGCAGCGGAGCAGAAGCTTCTATATTGGGTG AAACAGTTCCCAGTTGACAGTAGCAGATTTAGCATGATTATTGATCCAAGACTGAGAAATGAGTACTCTATCAAAGCAGCAAGGCAAATTGCTAAGTTGG CAGATAGCTGCCTAAACAAGAACGCAAAAGAGCGGCCGGCAATGACTCAAGTGGTGGCCAGCCTGAAGCAAATAATACAAGATTTGGAAGGGGGAAGCAC CTCCACAAATAAGAATTGTCGCATCCGACATCGCGGCGGCCTTAAAAAATTATGGAATCTTTGGAAAGAACGGATTTCTGGCATCCTGTTCTTTAATGGT GAATGGTCTTGTTTCAAGGAGTCGCCACCTAGTATTATGGTCACTAGGAACCCTAACTGGTCAACAGAGATTCTATGA
AA sequence Show only first row Show all	>Potri.003G085300.3 pacid=42786024 polypeptide=Potri.003G085300.3.p locus=Potri.003G085300 ID=Potri.003G085300.3.v4.1 annot-version=v4.1 MKCFYIFKDKSKNMKGKANLAPELGGQRKSDIPSSSRTAKSLPCPRSIPELYNVSEHNLQVFSFQELRKATTGFNRLLTIGEGGFGSVYKGTIRPANGQG DPIVVAIKKLNNHGLQGHKQWLAEVQFLRVVSHPNVVKLIGYCSVDGERGIQRLLVYEYMPKGSLEDHLFRRGLPNLPWRKRLEIILGAAEGLAYLHGGM EVQVIYRDFKSSNVLLDEDFKPKLSDFGLAREGPTGDRTHVSTAVLGTYGYAAPEYLETGHLTSQSDIWSFGVVLYEILTGRRTVETNRPAAEQKLLYWV KQFPVDSSRFSMIIDPRLRNEYSIKAARQIAKLADSCLNKNAKERPAMTQVVASLKQIIQDLEGGSTSTNKNCRIRHRGGLKKLWNLWKERISGILFFNG EWSCFKESPPSIMVTRNPNWSTEIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47070			Protein kinase superfamily pro...		Potri.003G085300 [exp]	0	1
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Potri.012G055600 [exp]	3.46	0.8562
AT3G09830			Protein kinase superfamily pro...		Potri.006G126000 [exp]	5.56	0.8822
AT4G39640		GGT1	gamma-glutamyl transpeptidase ...		Potri.005G082800 [exp]	5.74	0.8445
AT5G47730			Sec14p-like phosphatidylinosit...		Potri.016G005100 [exp]	5.91	0.8517	Pt-SSH1.1
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.006G022600 [exp]	6.00	0.8673
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.001G147300 [exp]	15.87	0.7808
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.010G178050 [exp]	20.34	0.8562
AT2G34930			disease resistance family prot...		Potri.010G107000 [exp]	22.51	0.8136
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Potri.001G309100 [exp]	22.80	0.8516
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.009G109400 [exp]	24.18	0.8494

Compare expression of checked genes

Potri.003G085300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.