Plant FIBer expression Database

Potri.003G085400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G17085 70 / 1e-17 Putative membrane lipoprotein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029696
[exp]
75 / 1e-19 AT4G17085 87 / 9e-25 Putative membrane lipoprotein (.1)
Lus10042735
[exp]
72 / 2e-18 AT4G17085 85 / 4e-24 Putative membrane lipoprotein (.1)
PFAM info
Representative CDS sequence
>Potri.003G085400.2 pacid=42785745 polypeptide=Potri.003G085400.2.p locus=Potri.003G085400 ID=Potri.003G085400.2.v4.1 annot-version=v4.1
ATGGGAAGATCATTCACACTAGTTCAAACAGTAACCACAGCCGGGGTTTTCTCTGCCGTTTCCTACTGGTATTCCTCAACTTTCTTATCGTCAGTCAATC
AGCTTTTTTTTTTATTTGATTTTATTTTTGGGGGTTGTAGGTATGGTTTCATGTTTGGAAGAGAATCAGCTCGGAAAGAGCTTGGAGACTTAATTGAAGA
TCTTCGCCGTGGAAATCCGAATTCAATTGAAGAGAATCAGCTCGGAAAGAGCTTGGAGACTTAA
AA sequence
>Potri.003G085400.2 pacid=42785745 polypeptide=Potri.003G085400.2.p locus=Potri.003G085400 ID=Potri.003G085400.2.v4.1 annot-version=v4.1
MGRSFTLVQTVTTAGVFSAVSYWYSSTFLSSVNQLFFLFDFIFGGCRYGFMFGRESARKELGDLIEDLRRGNPNSIEENQLGKSLET

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G17085 Putative membrane lipoprotein ... Potri.003G085400
[exp]
0 1
AT3G12587 Oligosaccaryltransferase (.1) Potri.008G053300
[exp]
1.00 0.8327
AT3G17130 Plant invertase/pectin methyle... Potri.008G102600
[exp]
4.00 0.7501
AT5G17190 unknown protein Potri.008G133600
[exp]
8.83 0.7450
AT4G25780 CAP (Cysteine-rich secretory p... Potri.018G096028
[exp]
9.79 0.6804
AT1G48440 B-cell receptor-associated 31-... Potri.012G042700
[exp]
10.95 0.7333
AT3G18030 ATHAL3A HALOTOLERANCE DETERMINANT 3, A... Potri.015G089600
[exp]
19.74 0.7267
AT1G12845 unknown protein Potri.017G060400
[exp]
25.49 0.6897
AT3G08610 unknown protein Potri.016G140900
[exp]
30.00 0.6787
AT4G33865 Ribosomal protein S14p/S29e fa... Potri.001G295902
[exp]
32.21 0.7220
AT1G73620 Pathogenesis-related thaumatin... Potri.012G047800
[exp]
32.29 0.7195

Potri.003G085400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.