Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17100 505 / 1e-178 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001086 [exp] 585 / 0 AT4G17100 523 / 0.0 unknown protein Lus10040133 [exp] 580 / 0 AT4G17100 522 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0695 [poplar] [flax] EndoU PF09412 [poplar] [flax] XendoU Endoribonuclease XendoU
Representative CDS sequence Show only first row Show all	>Potri.003G085600.1 pacid=42785635 polypeptide=Potri.003G085600.1.p locus=Potri.003G085600 ID=Potri.003G085600.1.v4.1 annot-version=v4.1 ATGGACGGTCTGATCAAGGGCCTCATGGACGTGGCGCTCGACCACCTCGGTCAAAAAGACGATGAATCCCGGGATGAACGCTCCAGATCATCCTGGGCTG AGGTGGTATCCGGCGAGGAGCAGGACGATCGGCAAAGTCAAGCGTATAATCGGAACAATCAGTGGGAATCACAGGAGAGCGAAGGAAGAAGAAAAGAGGG GTGGGAGACCGAGGGTTCGAGACGACCCCAAAAGGCCATGAATGAAGGGTATGGAAGAAATGAAGGTTTAGAAGAGCAACATGATTATGGCCCGAACCAT TGGAATAGGAAGGAGGATGGAGGAGAGAGTAATGATGGTTGGGAGACCGTGGGGAAAAAACATCCTCAACGACCACACAAGATCCAGATGGATCAATGGA ATGGATACAAAAGACCTCCGAGTGAACAAGAATACTCTAATGAGGTTGAAGAGAGTGCAGGAATAGGACCTACAAAAGAGGAGCTCGCTGACTTGTCACA AGCTTGCAACAGGCTTTGGGAACTTGACAGAAACCGTTTGGCTCCTGGCAAGGATTATCGGATTGATTGTGGGGAGGGGAAGAAGGTCTATGAGAAAGAA GATATGGCACAAGAAAGCTTATTTAGCTGGCTGAGTGATGATGTACTTAGGAGGCCAACTTTTTCTCGTTTCTGTTCACTTCTGGACAATTATAATCCAA ATCAAGGGAGCAAAGAAGTTATTACATCTGAAGAGAGGCAAGAGCAAGCTGCTTTTATAGAAGAAATCAGTAGAACTGCACCGATTAAGTATCTTCACAT GTATCTTGCATCGAAAGGCATTGTATCTGAAAATTACCAAGATTTTAAAAGAATATTGACTAGTCTCTGGTTTGATTTATATGGTCGAGGTGGTACATCC AGCTGCTCTTCTGCTTTTGAGCATGTTTTTGTGGGAGAAATTAAGCAGCGTGGGGAACAAGAAGTTTCTGGCTTTCATAACTGGCTTCAGTTCTACCTGG AAGAAGCGAAGGGGGCTGTTGATTATCAAGGTTATATTTCTCCTCGGAGAGGTGGACAGATTCCTGACTCAGAGAGCCAGGTGCTTACAATCCAGTTTGA ATGGAATGGAGTTCTGAAATCTGTGTCAAGCACCTTACTTGGAGTGAGTCCAGAGTTTGAAATCGCGTTGTATACTCTCTGTTTCTACGTGGGTGGAGAA GATAATTACGTGGAGCTGGGACCTTATCCTGTTAACATCAAATGCTACCGCTTCGGAGATAGAATTGGGTCTGTGTTTCCCGTAGCGTAG
AA sequence Show only first row Show all	>Potri.003G085600.1 pacid=42785635 polypeptide=Potri.003G085600.1.p locus=Potri.003G085600 ID=Potri.003G085600.1.v4.1 annot-version=v4.1 MDGLIKGLMDVALDHLGQKDDESRDERSRSSWAEVVSGEEQDDRQSQAYNRNNQWESQESEGRRKEGWETEGSRRPQKAMNEGYGRNEGLEEQHDYGPNH WNRKEDGGESNDGWETVGKKHPQRPHKIQMDQWNGYKRPPSEQEYSNEVEESAGIGPTKEELADLSQACNRLWELDRNRLAPGKDYRIDCGEGKKVYEKE DMAQESLFSWLSDDVLRRPTFSRFCSLLDNYNPNQGSKEVITSEERQEQAAFIEEISRTAPIKYLHMYLASKGIVSENYQDFKRILTSLWFDLYGRGGTS SCSSAFEHVFVGEIKQRGEQEVSGFHNWLQFYLEEAKGAVDYQGYISPRRGGQIPDSESQVLTIQFEWNGVLKSVSSTLLGVSPEFEIALYTLCFYVGGE DNYVELGPYPVNIKCYRFGDRIGSVFPVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17100			unknown protein		Potri.003G085600 [exp]	0	1
AT1G53750		RPT1A	regulatory particle triple-A 1...		Potri.018G056600 [exp]	4.35	0.8914
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.006G004232 [exp]	11.22	0.8718
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.015G130701 [exp]	12.64	0.8685
AT2G42040			unknown protein		Potri.006G193500 [exp]	14.14	0.8614
AT2G24800			Peroxidase superfamily protein...		Potri.018G015500 [exp]	17.14	0.8448
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.013G076501 [exp]	17.88	0.8363
AT5G03110			unknown protein		Potri.016G086900 [exp]	22.36	0.8607
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.004G219100 [exp]	30.41	0.8264
AT1G24560			unknown protein		Potri.008G184600 [exp]	31.30	0.8219
AT4G39630			unknown protein		Potri.005G082500 [exp]	33.13	0.8379

Compare expression of checked genes

Potri.003G085600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.