Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32730 326 / 2e-110 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G148500 [exp] 645 / 0 AT1G32730 315 / 5e-106 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001085 [exp] 335 / 7e-114 AT1G32730 253 / 1e-82 unknown protein Lus10040132 [exp] 330 / 4e-112 AT1G32730 243 / 2e-78 unknown protein Lus10011037 [exp] 206 / 2e-64 AT1G32730 132 / 2e-36 unknown protein Lus10000258 [exp] 204 / 6e-64 AT1G32730 140 / 6e-40 unknown protein Lus10003008 [exp] 101 / 2e-26 AT1G32730 86 / 1e-21 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05142 [poplar] [flax] DUF702 Domain of unknown function (DUF702)
Representative CDS sequence Show only first row Show all	>Potri.003G085901.1 pacid=42786036 polypeptide=Potri.003G085901.1.p locus=Potri.003G085901 ID=Potri.003G085901.1.v4.1 annot-version=v4.1 ATGGCAGCCTCTTCTCCGGTCATGAGCAATAACAGCTCCGACACCGGCCAAACCTCCATCTCCACCGCCGCCGGAGGCACGGTATCTTTCAGCGCACCAC CGAAGACTCTCCGCGGCCTCAACAAACCCAAGTGTATTCAGTGCGGCAACGTTGCCCGCTCCAGGTGCCCTTATCAGTCGTGCAAAAGTTGCTGCTCAAG AGCTCAAAATCCATGCCACATTCATGTTCTTAAAGCAAATGCAACATTTCCGGACAAGAGTCCAGCTTCAAGTGCCCCTCTCTTTGAGCAGCAGGTTAAT GAAGCGCCTCCTGCAGTGAGTTCGCATAGAGCTGCATCACTTCGGCAACTTTCTAGCAATTTTTCTCAATTCAACAATTTGCATTCCCCACTCCGCTCAA GAAAGCCATTGACCAGAAAGGAAGCTGCGGCAATAAATGAATGGAGGTTTTCCAAATTGAAGGAATTCAGGGACAGAAACATTGAAGTGGAAAATGAAGC TTTTGATCGGTATATGCATAATATTAGCCTGCTGGAGGAGGTATTTTCTTTGAAATCTTTCCTAGAAGGCTCCACTGAGGACGAATCACTCTCTTCAAAC CACGACCATGCTTCTGCAAAAGAGGACACTGAAGAAAAGATGGTTTCAGAGCAGAAGTTGAAGCTTAGGTCAAATCTGAGCAGGAGCGAGAATGACCGTA AGAGGTTACAACAAATTGTTGATGTGGGGTTGAAGAAGCTTCAGAAACTTGAGTTGAATAATGGCAGTGTTAATAACCAAAAAGAAGTTGATAAAAGGCC GGAGAAGGCAAAAAGTTTGCGGGCAGAGAAGGCCTCAGCTTTAAGTGATCTGATGGACAAGTTAAACAAAGCCCGCAATGAAGAGGACCTAAAGTCTTGC TCGGAGACAAAGGCCCAACTGTATAGTCAGCACGCTAGGTCTAGAACGGAAATCAAAGATTTTGAGGTATTGAGGGAGCAGACTGCCAAAAAAGACGTGG CACCCCAAAAAGAAATGGATTTTTTTTCACAAAAATTATTTAGAGCAGTGGAAATTGACCACGAAGCTCTGACTAGCATAGATGCACACTTCTCGTCCCT CGAAAAGATAGAAGATCTGTGA
AA sequence Show only first row Show all	>Potri.003G085901.1 pacid=42786036 polypeptide=Potri.003G085901.1.p locus=Potri.003G085901 ID=Potri.003G085901.1.v4.1 annot-version=v4.1 MAASSPVMSNNSSDTGQTSISTAAGGTVSFSAPPKTLRGLNKPKCIQCGNVARSRCPYQSCKSCCSRAQNPCHIHVLKANATFPDKSPASSAPLFEQQVN EAPPAVSSHRAASLRQLSSNFSQFNNLHSPLRSRKPLTRKEAAAINEWRFSKLKEFRDRNIEVENEAFDRYMHNISLLEEVFSLKSFLEGSTEDESLSSN HDHASAKEDTEEKMVSEQKLKLRSNLSRSENDRKRLQQIVDVGLKKLQKLELNNGSVNNQKEVDKRPEKAKSLRAEKASALSDLMDKLNKARNEEDLKSC SETKAQLYSQHARSRTEIKDFEVLREQTAKKDVAPQKEMDFFSQKLFRAVEIDHEALTSIDAHFSSLEKIEDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32730			unknown protein		Potri.003G085901 [exp]	0	1
AT4G22000			unknown protein		Potri.015G012700 [exp]	3.46	0.8821
AT1G78620			Protein of unknown function DU...		Potri.001G384300 [exp]	4.47	0.8042
AT5G18260			RING/U-box superfamily protein...		Potri.006G180600 [exp]	4.69	0.8019
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.004G030000 [exp]	5.19	0.8809
					Potri.003G152950 [exp]	6.32	0.8807
AT1G76860			Small nuclear ribonucleoprotei...		Potri.002G068800 [exp]	6.48	0.8433
AT4G10970			unknown protein		Potri.001G090900 [exp]	7.34	0.8361
AT3G27100			unknown protein		Potri.001G330400 [exp]	12.00	0.8364
AT1G78420			RING/U-box superfamily protein...		Potri.011G096000 [exp]	12.40	0.8271
AT5G65650			Protein of unknown function (D...		Potri.005G125000 [exp]	12.72	0.7077

Compare expression of checked genes

Potri.003G085901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.