Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47030 291 / 2e-101 ATPase, F1 complex, delta/epsilon subunit (.1) ATCG00470 40 / 0.0002 ATCG00470.1, ATPE ATP synthase epsilon chain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G053000 [exp] 275 / 4e-95 AT5G47030 308 / 6e-108 ATPase, F1 complex, delta/epsilon subunit (.1) Potri.007G062142 [exp] 40 / 0.0002 ATCG00470 219 / 6e-75 ATP synthase epsilon chain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001082 [exp] 299 / 3e-104 AT5G47030 315 / 6e-111 ATPase, F1 complex, delta/epsilon subunit (.1) Lus10040130 [exp] 297 / 2e-103 AT5G47030 316 / 3e-111 ATPase, F1 complex, delta/epsilon subunit (.1) Lus10011038 [exp] 278 / 3e-87 AT5G47040 1413 / 0.0 lon protease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02823 [poplar] [flax] ATP-synt_DE_N ATP synthase, Delta/Epsilon chain, beta-sandwich domain
Representative CDS sequence Show only first row Show all	>Potri.003G086100.1 pacid=42784851 polypeptide=Potri.003G086100.1.p locus=Potri.003G086100 ID=Potri.003G086100.1.v4.1 annot-version=v4.1 ATGTTACGCCAAGCATCACGCCTACTGACTCGATCCATCGCCACCACTCAACAACCGATTAGGGTGATGGGGGCTCGACCCATGTCGACGAACTTGCCAG ACACACCCGTCCAGGACTCAGCATTTATTGAATCATGGAAAAAAGTGGCACCAAACATTGATCCACCAAAGACTCCATCGGCTTTTATGAAGCCTCGTCC TCCTACTCCATCTACTATTCCTTCTAAGATCACTGTCAATTTTGTTCTTCCATATGCATCAGAGCTCACCTCCAAGGAGGTTGACATGGTCATTATACCA GCAACAACTGGGCAAATGGGTGTTTTGCCAGGGCATGTACCTACTATTGCGGAACTGAAGCCTGGGGTCTTATCAGTCCATGAAGGAAATGATGTGAAAA AATATTTCCTTAGCAGTGGGTTTGTCTTTGTCCATGCAAACTCGGTTGCTGATATAGTCGTTGTTGAGGCTGTTCCAATTGACCACATTGATCAGAACTT GGTTCAAAAGGGGCTAGCAGATTTCACACAGAAGCTCAGCTCAGCTACAACCGAGTTGGAGAAAGCTGAGGCACAGATTGGTATTGATGTTCACAGTGCT CTCAACTCTGCATTGGTAGGCTGA
AA sequence Show only first row Show all	>Potri.003G086100.1 pacid=42784851 polypeptide=Potri.003G086100.1.p locus=Potri.003G086100 ID=Potri.003G086100.1.v4.1 annot-version=v4.1 MLRQASRLLTRSIATTQQPIRVMGARPMSTNLPDTPVQDSAFIESWKKVAPNIDPPKTPSAFMKPRPPTPSTIPSKITVNFVLPYASELTSKEVDMVIIP ATTGQMGVLPGHVPTIAELKPGVLSVHEGNDVKKYFLSSGFVFVHANSVADIVVVEAVPIDHIDQNLVQKGLADFTQKLSSATTELEKAEAQIGIDVHSA LNSALVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47030			ATPase, F1 complex, delta/epsi...		Potri.003G086100 [exp]	0	1
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Potri.009G061600 [exp]	1.00	0.9645
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Potri.002G034100 [exp]	2.82	0.9508	APFI.1
AT3G08580		AAC1	ADP/ATP carrier 1 (.1.2)		Potri.001G267800 [exp]	3.87	0.9360	Pt-ANT1.1
AT2G20820			unknown protein		Potri.013G146000 [exp]	4.00	0.9367
AT5G58640			Selenoprotein, Rdx type (.1.2)		Potri.016G117600 [exp]	4.12	0.9218
AT5G13430			Ubiquinol-cytochrome C reducta...		Potri.003G162200 [exp]	4.89	0.9311
AT5G45620			Proteasome component (PCI) dom...		Potri.001G135200 [exp]	5.29	0.9233
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Potri.005G162100 [exp]	5.74	0.9417	COX6.2
AT3G07480			2Fe-2S ferredoxin-like superfa...		Potri.002G239000 [exp]	6.78	0.9096
AT3G03100			NADH:ubiquinone oxidoreductase...		Potri.019G051400 [exp]	7.54	0.8902

Compare expression of checked genes

Potri.003G086100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.