Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47020 1621 / 0 unknown protein AT5G11700 1080 / 0 unknown protein AT4G32920 1018 / 0 glycine-rich protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G148300 [exp] 2178 / 0 AT5G47020 1624 / 0.0 unknown protein Potri.006G234500 [exp] 1092 / 0 AT5G11700 1793 / 0.0 unknown protein Potri.018G058300 [exp] 1019 / 0 AT5G11700 1779 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007257 [exp] 1312 / 0 AT5G47020 1321 / 0.0 unknown protein Lus10005497 [exp] 1047 / 0 AT5G11700 1842 / 0.0 unknown protein Lus10007461 [exp] 1024 / 0 AT5G11700 1835 / 0.0 unknown protein Lus10043045 [exp] 1014 / 0 AT5G11700 1537 / 0.0 unknown protein Lus10011144 [exp] 585 / 0 AT5G11700 1470 / 0.0 unknown protein Lus10007259 [exp] 247 / 2e-73 AT5G47020 218 / 2e-64 unknown protein Lus10007258 [exp] 133 / 5e-36 AT5G47020 169 / 1e-49 unknown protein Lus10000229 [exp] 106 / 3e-26 AT4G32920 182 / 5e-54 glycine-rich protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G086200.1 pacid=42786588 polypeptide=Potri.003G086200.1.p locus=Potri.003G086200 ID=Potri.003G086200.1.v4.1 annot-version=v4.1 ATGTGGGCGGTAATGTGTCCTTTGCTAATGCTATGGTACCCTTGCTGGTGCATTCTTTTAGGGAATTTTTGTGTGTCCACTTTTTCGTTTGGGCCAGGGC AGCATGGGGGTGGTGGCATTTGGTCAGGAAATGAGTTGCATAACTCCGGTTCAATTTCAAGCAATCACTCTAGAAGTGGCATCTCTAGCTATGCCAAGAC ATTAAAATTTTCTCTGCCATTAAACAGTTCTGTATCATGTGAGGACCTAGAAGGAGTGGGATCATTTGATACCACATGCTTGGTAAACTCAAATTTGTAT TTGAATTCTGATCTTTATATTTATGGAACGGGAAACCTAGAGATACTTCCACATGTTTCAATTGCATGCCCAATAGAAGGATGTATGGTGACGATCAATA TGACTGGCAATGTTAACATTGGTCAATATGCAACAATTGTTGCTGGTTCAGTTGTTTTTGCTGTTGCCAACTTGACCATGGATAGTCACTCTTCTATAAA TACAACAGCCTTGGGTGGATCACCACCACCCCAAACTAGTGGTACACCAGTTGGGGATGATGGAGGTGGTGGTGGGCATGGTGGTCGAGGTGCTTCCTGT TTGAAAAGGAACAAGACAAGTAATTGGGGTGGTGATGTTTATGCATGGTCAACCTTGGCTGAGCCATGGAGCTATGGTAGTAAGGGCGGTGGCACATCTT CTCGGAATAAATTTGGAGGGAATGGTGGAGGACGCATCAAGATTCAAGTGAAGGAGATTGTGTGCTTGAATGGATCTATCGCTGCAGAAGGTGGGGATGG GGGGCTGATTGGGGGAGGTGGGTCTGGTGGAAGCATATTTGTGCATGCTGTGAAACTGAAGGGATATGGAACTATCAGTGCAGCAGGTGGAAGGGGATGG GGTGGAGGTGGCGGTGGAAGAATTTCTTTGGATTGTTATAGCATACAGGAAGATGTGAAAGTTACTGTACATGGTGGTTTGAGTATTGGCTGTCCTGGGA ATGCTGGAGCAGCTGGTACATTCTTTAACGCAGATTTACTCAGTTTAAGAGTGAGCAATGACTACGTGATGACAGAAACAGAAACCCCTTTGCTTGATTT TCCTACCACGATTCTATGGTCAAATGTTTTTGTGGAGAATTATGCAAAAGTTTTGGTCCCCCTGGTTTGGAGCAGGATTCAGGTCAGAGGCCAGATTAGT TTATATCATGGAGGCAGCATTGTCTTTGGATTGTCTGAATTCCCAGTATCAGAATTTGAGCTTGTAGCAGAAGAGCTTTTGATGAGCGATTCTATCATAA AGGTTTTTGGCGCATTTAGAGTTGCTATCAAAATGCTACTCATGTGGAACTCCAAAATTGAAATAGATGGAGGTGGAAATACTATTGTTACTGCTTCTGT CCTTGAAGTCAGGAATCTGATTGTTCTAACGGCAGGCTCTGTCCTCAGTTCAAATTCAAATTTGGGGTTATATGGTCAAGGACTACTGAAGTTGACGGGT CATGGTGATACAATTAGAGGCCAGCGACTTTCCTTGTCTCTTTTTTATAACATAACTGTTGGACCTGGTTCTTTAGTTCAAGCACCATTGGATGATAATG CTAGCAGAAGTTTGGTTACAAAATCACTTTGTGAGAGTCAGACATGTCCAATAGATTTGATAACTCCCCCAGATGATTGCCATGTTAATTACACACTGTC GTTTTCACTTCAGATTTGTCGTGTCGAGGACCTCCTTGTAAATGGCATTGTAAAGGGGAGTATCATCCACATCCACAGGGCAAGAACTATCATTATTGAT GCTGATGGCTTGATTACTGCATCAGAGTTAGGTTGCAGTGGTGGTATTGGGAAAGGGAACTATTCCAAAGGAGCTGGTAGTGGTGCTGGACATGGGGGGA GAGGGGGCTCAGGTTGTTTTAATGGGATTGTGAGTAATGGCGGCAATAAATATGGTAAAGCTGATCTTCCTTGTGAATTGGGAAGCGGAACCGAAGGTCC GAATCAGTCCTATGGCAATGTGATTGGAGGGGGAATGATTGTGATGGGATCCATCCAGTGGCCGCTGTTGAAGCTTAATCTTTATGGATCTTTGAGAGTA GATGGTCAAAGCTTTGATAAAGCATCAATAAATAGTAATGCTTCTTTGATTGGTGGACTTGGTGGAGGTTCTGGAGGGACGGTTCTTGTTTTCCTGCAAG AGCTTATGCTTGCAGAAAACTCGTCTTTATCTGTTCGTGGGGGCAATGGCAGTCCTCTTGGTGGTGGAGGAGGTGGGGGTGGAAGAGTTCATTTTCATTG GTATAAAATAGACATTGGGGATGAATATGTTCCAGTTGCAAGTATAAGTGGTTCAATTAACAGAAGTGGAGGTGCTGGAGAAAATGGTGGTCTTTTTGGG GAGGAAGGCACGGTCACTGGGAAAAAATGCCCGAAGGGCCTATATGGTACATTTTGCAAGGAATGCCCTCTCGGTACTTTCAAAGATGTCGATGGATCTG ATGAAAGTCTTTGCATTCCTTGCTCTCTTGATCTTCTTCCTAATCGTGCAAATTTTATATATGTTCGAGGGGGAGTTAGTGAACCATCTTGTCCATATAA ATGCATATCTGACAAGTACAGGATGCCAAACTGTTATACTCCTCTTGAGGAGCTGGTGTATACATTTGGAGGCCCTTGGCCTTTTGCCCTCATTCTGTCT TTCCTTTTGGTGCTTCTAGCTCTATTGTTGAGTACAGTGAGAGTCAAATTGGTAGGATCAGGTTCTTGTTATGGTGCAAGTTCAGTTGAGCATCAGAGTC ATCACCACTTTCCACATCTACTTTCCCTATCAGAGGTGCGAGGAACTAGAGCTGAAGAAAGTCAGAGCCATGTCTACAGAATGTACTTTATGGGTCCCAA TACTTTTAGGGAACCCTGGCATCTTCCTTATTCTCCTCCCAATGCAATTATTGAGATTGTATATGAAGATGCTTTTAACAGATTTATTGATGATATAAAT TCTGTTGCTGCCTATGATTGGTGGGAAGGGTCGGTTCACAGTATACTTTCAGTGGTTGCCTATCCTTGTGCATGGTCCTGGAAACAGTGGCGGCAGAGAA ATAAAATTCATCGACTTCAGGAATATGTCAAGTCTGAATATGACCACTCGTGTCTTAGCTCTTGTCGATCTCGAGCCCTATACAAGGGGATGAAGGTTGG GGCGACACCAGACTTAATGGTTGCTTACATTGACTTTTTCCTTGGTGGTGATGAGAAGCGTTTAGATATAGTGTCTATAATACAAAAGAGATTTCCCATG TGCATAATATTTGGAGGTGATGGGAGCTATATGTCACCTTATAATCTACACAGTGACACATTATTGACCAGTCTTCTTGGTCAGCATGTCCCTGCAACTG TCTGGAATCGTTTGGTGGCTGGTTTAAATGCTCAGTTGAGGACTGTGAGGCATGGATCTATCCGCTCTGCTCTACTTCCTGTAATTGATTGGATATGCAG CCATGGAAATCCCCAGCTCGAGTTCCATGGAGTTAAGATAGAGCTAGGATGGTTCCAAGCTACTGCTTCTGGTTACTATCAGTTAGGTGTCTTAGTAATG GTTGGTGATTATTCTCTCCATTCTATGCACCAGTCTGACTGCATAGATAAAAGCAATAGTGAATCAGCAAGGAACAATCATTCATATTACAGGAACAATG CCTCATGTACGAGCAGAAGTCTTAAGCTGCTTCAGCAAGAGCGGCCATACTTGAGTCAAGCTTTATCTCGCAAAAAGATGACGGGGGGAATTAATGGAGG TCTTCTGAATGAAGCTACCTTGAAATCTCTGGATTTTAAAAGGGACTTTCTCTTTCCACTCTCTCTCTTATTGCATAATACTAGACCTGTCGGTCGCCAG GATACTCTTCAGCTTTTCATTACTATCATGCTTTTGGCAGATCTTTCTGTCACACTTCTCACATTACTTCAGTTCTATTGGATTTCTCTTGGTGCTTTCC TTGCTGTACTGCTTGTTCTTCCTCTATCCTTGCTTTCTCCATTCCCTGCAGGCTTGAATGCCTTATTCAGCAGGGAACCTAGAAGAGCCTCACTTGCTCG TGTATATACATTATGGAATGCGACATCCCTGTCTAACATTGCTGTAGCTTTCACTTGTGGTATTTTTCATTATGGATTTTCTTCTTTCCGGCCACCTGAT GAGGAAAACACATGGAACATTAGAAGGGAGGACGATAAATGGTGGCTGTTGCCAACTATCCTTTTGCTGTTCAAGTCAGTACAAGCTCGTTTTGTAGATT GGCACATTGCTAATCTAGAAATCCAAGACTTTTCTTTGTTCTGCCCAGATCCAGATGCTTTTTGGGCCCACGAATCTAGTTCATGA
AA sequence Show only first row Show all	>Potri.003G086200.1 pacid=42786588 polypeptide=Potri.003G086200.1.p locus=Potri.003G086200 ID=Potri.003G086200.1.v4.1 annot-version=v4.1 MWAVMCPLLMLWYPCWCILLGNFCVSTFSFGPGQHGGGGIWSGNELHNSGSISSNHSRSGISSYAKTLKFSLPLNSSVSCEDLEGVGSFDTTCLVNSNLY LNSDLYIYGTGNLEILPHVSIACPIEGCMVTINMTGNVNIGQYATIVAGSVVFAVANLTMDSHSSINTTALGGSPPPQTSGTPVGDDGGGGGHGGRGASC LKRNKTSNWGGDVYAWSTLAEPWSYGSKGGGTSSRNKFGGNGGGRIKIQVKEIVCLNGSIAAEGGDGGLIGGGGSGGSIFVHAVKLKGYGTISAAGGRGW GGGGGGRISLDCYSIQEDVKVTVHGGLSIGCPGNAGAAGTFFNADLLSLRVSNDYVMTETETPLLDFPTTILWSNVFVENYAKVLVPLVWSRIQVRGQIS LYHGGSIVFGLSEFPVSEFELVAEELLMSDSIIKVFGAFRVAIKMLLMWNSKIEIDGGGNTIVTASVLEVRNLIVLTAGSVLSSNSNLGLYGQGLLKLTG HGDTIRGQRLSLSLFYNITVGPGSLVQAPLDDNASRSLVTKSLCESQTCPIDLITPPDDCHVNYTLSFSLQICRVEDLLVNGIVKGSIIHIHRARTIIID ADGLITASELGCSGGIGKGNYSKGAGSGAGHGGRGGSGCFNGIVSNGGNKYGKADLPCELGSGTEGPNQSYGNVIGGGMIVMGSIQWPLLKLNLYGSLRV DGQSFDKASINSNASLIGGLGGGSGGTVLVFLQELMLAENSSLSVRGGNGSPLGGGGGGGGRVHFHWYKIDIGDEYVPVASISGSINRSGGAGENGGLFG EEGTVTGKKCPKGLYGTFCKECPLGTFKDVDGSDESLCIPCSLDLLPNRANFIYVRGGVSEPSCPYKCISDKYRMPNCYTPLEELVYTFGGPWPFALILS FLLVLLALLLSTVRVKLVGSGSCYGASSVEHQSHHHFPHLLSLSEVRGTRAEESQSHVYRMYFMGPNTFREPWHLPYSPPNAIIEIVYEDAFNRFIDDIN SVAAYDWWEGSVHSILSVVAYPCAWSWKQWRQRNKIHRLQEYVKSEYDHSCLSSCRSRALYKGMKVGATPDLMVAYIDFFLGGDEKRLDIVSIIQKRFPM CIIFGGDGSYMSPYNLHSDTLLTSLLGQHVPATVWNRLVAGLNAQLRTVRHGSIRSALLPVIDWICSHGNPQLEFHGVKIELGWFQATASGYYQLGVLVM VGDYSLHSMHQSDCIDKSNSESARNNHSYYRNNASCTSRSLKLLQQERPYLSQALSRKKMTGGINGGLLNEATLKSLDFKRDFLFPLSLLLHNTRPVGRQ DTLQLFITIMLLADLSVTLLTLLQFYWISLGAFLAVLLVLPLSLLSPFPAGLNALFSREPRRASLARVYTLWNATSLSNIAVAFTCGIFHYGFSSFRPPD EENTWNIRREDDKWWLLPTILLLFKSVQARFVDWHIANLEIQDFSLFCPDPDAFWAHESSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47020			unknown protein		Potri.003G086200 [exp]	0	1
AT3G17850			Protein kinase superfamily pro...		Potri.015G035600 [exp]	1.73	0.8475
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Potri.003G107700 [exp]	2.44	0.8313
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Potri.013G032100 [exp]	3.00	0.7841
AT2G15900			Phox-associated domain;Phox-li...		Potri.004G146600 [exp]	3.46	0.8287
AT4G02480			AAA-type ATPase family protein...		Potri.015G094100 [exp]	5.29	0.7947
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.003G221100 [exp]	12.64	0.8092
AT3G50430			unknown protein		Potri.005G133500 [exp]	13.63	0.7980
AT1G69220		SIK1	Protein kinase superfamily pro...		Potri.010G157400 [exp]	13.71	0.7351	SIK1.1
AT5G47020			unknown protein		Potri.001G148300 [exp]	13.78	0.7833
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.003G030000 [exp]	14.83	0.7581

Compare expression of checked genes

Potri.003G086200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.