Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47010 2043 / 0 ATUPF1, UPF1, LBA1 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) AT2G03270 206 / 8e-56 DNA-binding protein, putative (.1) AT5G35970 196 / 5e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G15570 192 / 3e-50 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G05460 190 / 4e-49 SDE3 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 183 / 1e-46 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30100 179 / 3e-45 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37030 163 / 1e-41 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G16800 163 / 3e-40 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37150 160 / 4e-40 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G148100 [exp] 2404 / 0 AT5G47010 2008 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.006G054600 [exp] 206 / 1e-55 AT2G03270 1058 / 0.0 DNA-binding protein, putative (.1) Potri.013G073900 [exp] 207 / 2e-54 AT5G35970 1414 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G056700 [exp] 192 / 3e-50 AT4G15570 1058 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G155400 [exp] 182 / 8e-47 AT1G05460 1127 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G047500 [exp] 180 / 5e-46 AT1G05460 1051 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G143000 [exp] 175 / 1e-43 AT1G65810 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143450 [exp] 173 / 3e-43 AT1G65810 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G142960 [exp] 170 / 3e-42 AT1G65810 683 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003024 [exp] 2186 / 0 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10011054 [exp] 2123 / 0 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10024974 [exp] 209 / 2e-57 AT5G35970 825 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10026309 [exp] 207 / 5e-56 AT2G03270 1085 / 0.0 DNA-binding protein, putative (.1) Lus10024527 [exp] 208 / 1e-54 AT5G35970 1343 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038906 [exp] 175 / 1e-44 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033462 [exp] 176 / 2e-44 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037353 [exp] 172 / 3e-43 AT1G65810 543 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10015030 [exp] 169 / 7e-43 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10042360 [exp] 166 / 7e-43 AT2G03270 613 / 0.0 DNA-binding protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF09416 [poplar] [flax] UPF1_Zn_bind RNA helicase (UPF2 interacting domain) CL0023 [poplar] [flax] P-loop_NTPase PF13086 [poplar] [flax] AAA_11 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.003G086400.5 pacid=42784900 polypeptide=Potri.003G086400.5.p locus=Potri.003G086400 ID=Potri.003G086400.5.v4.1 annot-version=v4.1 ATGGATAACCAAGACAATAACCTCTACGAAACGGCCTCGCAGCCAGACACAGCAACAGACGCCTACACCTTCCTTGAATTCAACACACAAGGCGAATCCG ATTTTGACTACCCCGAATTCCGCTCTCCGGTGGCCTGGCCCACTCCTTCTGACTCTCTCGGCGCCACCTCCTCCGCCGTAGACCCTACCTCGTCCGACCA CCGTACCGCCGCTTCCACCCCCGATCTCCACTCTGATTCTCTTGCTGCGTCTCCTGTCGCGTCAAAATCTGCTGCGCGTGGCGGTGGAGCGAACAGTGGG ACCCAGGGGGTGGTGGAGGGGTTAGTAGCGAGCATAGGAGGGTTGAATTTTGAAGAGACGGGAGATGATGACGGGTATGAGTTTGGGAAAGGGGATTTTA CGGAGCACGCTTGCAGGTACTGTGGGGTTTCGAATCCTGCGTGTGTTGTGAGGTGTAATGTGCCGTCATGTAGGAAGTGGTTCTGTAATTCAAGAGGGAA TACATCTGGTTCGCATATTGTTAATCATCTGGTTCGAGCAAAGCATAAAGAAGTCTGTCTCCATAAAGACAGCCCTCTTGGAGAAACAATACTTGAGTGC TACAACTGTGGTTGCCGAAATGTGTTTCTTCTTGGATTTATATCGGCCAAGACAGAGAGTGTTGTTGTCCTCCTCTGCAGGGAGCCTTGCTTGAATGTTA ATGCGCTGAAGGACATGAATTGGGACCTGAGCCAGTGGTGCCCCCTTATTGATGATAGGTGTTTTCTACAGTGGCTTGTGAAGATCCCATCCGAACAGGA GCAGTTGAGGGCTCGCCAAATTAGTGCTCAACAAATAAATAAAGTAGAAGAACTTTGGAAAACTAATCCTGATGCCACCCTTGAAGATCTTGAGAAGCCT GGTGTTGATGATGAGCCACAGCCTGTGGCATTGAAGTATGAAGATGCATATCAGTACCAAAATGTATTTGCTCCACTTATTAAGCTTGAAGCTGACTATG ATAAAATGATGAAAGAGTCTCAAAGCAAGGATAATGTCACTATTCGATGGGATATTGGCCTTAACAAGAAGCGTGTTGCATATTTTGTATTTCCAAAGGA GGACAATGAGTTGCGTCTTGTACCTGGTGATGAGTTACGACTGCGCTATTCTGGAGATGCAGCTCATCCAGCATGGCAATCAGTTGGGCATGTGATCAAG CTAACTGCACAAGAGGAGGTTGCACTTGAGCTTCGTGCTAGTCAGGGAGTTCCTGTTGACGTGAACCATGGTTTTAGTGTTGATTTTGTTTGGAAGAGCA CGAGCTTTGATCGGATGCAGGGAGCAATGAAGACTTTTGCAGTGGATGAAACCAGTGTCAGTGGGTATATATATCACCACTTGTTGGGCCATGAGGTTGA GAATCAAACAGTTCGTAATGCATTGCCTCGCCGTTTTGGGGCACCTGGTCTTCCAGAGCTGAATGCATCCCAAGTTCTTGCTGTGAAGAATGTCCTCCAA AAGCCCATTAGTTTGATTCAAGGTCCACCTGGCACAGGAAAAACTGTCACTTCTGCAGCCATTGTATATCACATGGCCAAACAGGGCCAAGGGCAGGTTT TGGTGTGTGCCCCAAGTAATGTGGCTGTAGATCAGCTAGCTGAGAAGATAAGTGCCACTGGCTTAAAGGTGGTTAGGCTATGTGCAAAATCAAGGGAAGC TGTTAGTTCTCCTGTTGAGCATCTCACCCTTCACTATCAGGTCAGACATCTGGACACTTCAGAGAAAAGTGAACTTCACAAGTTGCAACAATTGAAAGAT GAACAAGGGGAACTGTCCAGCAGTGATGAGAAAAAATACAAAGCACTGAAACGAGCAACTGAAAGGGAAATTTCTCAAAGCGCTGATGTCATCTGTTGCA CTTGTGGTGGTGCTGGAGATCCTCGGTTGTCAAATTTTAGGTTTCGCCAGGTACTAATTGATGAGTCAACTCAAGCGACAGAACCAGAGTGTCTTATTCC TTTGGTACTTGGGGCGAAGCAGGTTGTTTTTGTTGGTGACCATTGCCAGCTTGGTCCTGTCATTATGTGCAAGAAAGCTGCTCGTGCTGGGTTAGCCCAG TCTCTCTTTGAACGCCTTGTTTTACTTGGTGTGAAACCAATTAGATTGCAGGTTCAATATCGCATGCACCCGTGTCTTTCTGAATTTCCATCTAACAACT TTTATGAAGGCACTCTACAAAATGGAGTGACTGTCAATGAGAGACAATCGTCAGGCATTGATTTTCCTTGGCCTGTGCCTAATCGTCCTATGTTCTTCTA TGTCCAGATGGGACAAGAAGAGATAAGTGCCAGTGGAACATCCTATCTAAATCGTACGGAGGCTGCAAATGTTGAAAAAATTGTAACTACATTTTTGAGG AGCGGTGTAGTCCCGAGCCAGATTGGAGTGATAACACCTTATGAGGGGCAGAGAGCATATATTGTGAACTATATGTCAAGAAATGGTGCCCTCAGACAGC AACTATACAAGGAAATTGAGGTTGCAAGTGTTGATTCATTTCAAGGAAGAGAAAAAGATTACATTATTTTGTCTTGTGTTAGGAGCAATGAACATCAGGG CATTGGATTTCTTAATGATCCTCGGAGGCTGAATGTTGCTCTAACTCGTGCACGATATGGTATTGTCATCCTGGGAAACCCTAAAGTTCTAAGCAAGCAG CCTTTGTGGAATAGCTTATTAACTCACTACAAGGAACACGAGTGTTTGGTTGAAGGACCTTTGAATAACTTAAAGCAGAGTATGGTTCAATTTCAAAAGC CCAAAAAGATTTATAACGATAGGAGATTGTTTTTTGGTGGTGGACCTGGAATTGTCCCAAATGATAGTTTTGGGTCTGTTGCCTCAGCTAGCTCAAATGC TGATAGAAGAAACTCCCGTTCCAGGGGTTCTTATTTGTCACCAGGCCCACCGAATGGTACCCATAAGCCTGGTGTTGCTGGGTTTCCAATGCCTCGGGTC CCCATTCCACCATTTCATGATGGTCCACCTTCTCAACCATATGCTATTCCTACTCGTGGAGCTGTGCATGGGCCCATCGGAGCTGTTCCTCAAGTCCCTC CACCTGGAAGTCGAGGTTTTAGTGCTGGGCGTGGCAATGCTGGTGCACCTATTGGAAGTCATCTCTCTCACCAGCAAGGCAACCAGCAAGGCATTGGGAA TATTGGATCTTTCAACTTTCCTGCCCTAGAGAATCCAAATAGCCAGCCATCTGTGGGTGGTCCACTATCTCAGCCTGGATATGTTAATAATATTCCAGTT CAAGGGTCGAGCCAAACCTTTCGTGATGGATTTTCCATGGGGGGTATGTCCCAGGAGTTCTTGGGCGATGACTTCAAAAGCCAGGGATCACATGTTCCTT ACAATGTTGCTGATTTCTCAACTCAGGCATCTCAAGGTGGATATGCTGTCGATTATGTTACACAAGGGGCACAAGGTGGGTTTCCAGGCAACTTCTTGAA TCAGAATTCTCAACCTGGATATTCTCGTTTTGGTTCTGGAAATGATTTCATGTCTCAGGATTACATGGCTCATGGATCACAAGGTCTATTCACTCAGGTT GGCTATAATGATCCCTCACAAGATGATGCATCACAAAGCCACTTTGGCATAGCCAACCCTAACCAGCTTCAATCACAGGGCTTGATGAATTCTCTTTACT CTCAGCCCTTTGGCCACTACAACACTCAGCAGCTGAACTTGCAGGCTCCACAACAGCAGCCGCAGCAGGGTCAGGGTACCCAAAACCAGAAAATCCATTA CAATGGTTGA
AA sequence Show only first row Show all	>Potri.003G086400.5 pacid=42784900 polypeptide=Potri.003G086400.5.p locus=Potri.003G086400 ID=Potri.003G086400.5.v4.1 annot-version=v4.1 MDNQDNNLYETASQPDTATDAYTFLEFNTQGESDFDYPEFRSPVAWPTPSDSLGATSSAVDPTSSDHRTAASTPDLHSDSLAASPVASKSAARGGGANSG TQGVVEGLVASIGGLNFEETGDDDGYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILEC YNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKP GVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIK LTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVENQTVRNALPRRFGAPGLPELNASQVLAVKNVLQ KPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKD EQGELSSSDEKKYKALKRATEREISQSADVICCTCGGAGDPRLSNFRFRQVLIDESTQATEPECLIPLVLGAKQVVFVGDHCQLGPVIMCKKAARAGLAQ SLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNNFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLR SGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQ PLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPNDSFGSVASASSNADRRNSRSRGSYLSPGPPNGTHKPGVAGFPMPRV PIPPFHDGPPSQPYAIPTRGAVHGPIGAVPQVPPPGSRGFSAGRGNAGAPIGSHLSHQQGNQQGIGNIGSFNFPALENPNSQPSVGGPLSQPGYVNNIPV QGSSQTFRDGFSMGGMSQEFLGDDFKSQGSHVPYNVADFSTQASQGGYAVDYVTQGAQGGFPGNFLNQNSQPGYSRFGSGNDFMSQDYMAHGSQGLFTQV GYNDPSQDDASQSHFGIANPNQLQSQGLMNSLYSQPFGHYNTQQLNLQAPQQQPQQGQGTQNQKIHYNG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Potri.003G086400 [exp]	0	1
AT3G06670			binding (.1.2)		Potri.010G142200 [exp]	1.73	0.9115
AT4G08350		GTA2, GTA02	global transcription factor gr...		Potri.009G124200 [exp]	2.00	0.9193
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.010G219600 [exp]	3.46	0.9028
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.013G085000 [exp]	3.74	0.9028
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.010G178600 [exp]	4.47	0.9037
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Potri.009G155200 [exp]	5.65	0.9049	TTN8.2
AT5G35560			DENN (AEX-3) domain-containing...		Potri.006G143000 [exp]	8.48	0.8717
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Potri.004G043200 [exp]	8.66	0.8872
AT1G77800			PHD finger family protein (.1....		Potri.002G089400 [exp]	8.94	0.8968
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Potri.016G069100 [exp]	9.00	0.8985

Compare expression of checked genes

Potri.003G086400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.