Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46920 1150 / 0 Intron maturase, type II family protein (.1) AT1G30010 733 / 0 Intron maturase, type II family protein (.1) AT5G04050 49 / 1e-05 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) ATMG00520 44 / 0.0003 ATMG00520.1, MATR Intron maturase, type II family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G147801 [exp] 1393 / 0 AT5G46920 1140 / 0.0 Intron maturase, type II family protein (.1) Potri.004G132450 [exp] 778 / 0 AT1G30010 988 / 0.0 Intron maturase, type II family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011050 [exp] 1228 / 0 AT5G46920 1110 / 0.0 Intron maturase, type II family protein (.1) Lus10028124 [exp] 761 / 0 AT1G30010 1011 / 0.0 Intron maturase, type II family protein (.1) Lus10003020 [exp] 645 / 0 AT5G46920 572 / 0.0 Intron maturase, type II family protein (.1) Lus10042828 [exp] 452 / 4e-153 AT1G30010 617 / 0.0 Intron maturase, type II family protein (.1) Lus10003019 [exp] 161 / 3e-46 AT5G46920 147 / 2e-42 Intron maturase, type II family protein (.1) Lus10038971 [exp] 47 / 6e-05 AT5G04050 704 / 0.0 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0359 [poplar] [flax] Intron-mat_II PF01348 [poplar] [flax] Intron_maturas2 Type II intron maturase
Representative CDS sequence Show only first row Show all	>Potri.003G086801.1 pacid=42787499 polypeptide=Potri.003G086801.1.p locus=Potri.003G086801 ID=Potri.003G086801.1.v4.1 annot-version=v4.1 ATGCATCGTCGCCTTGCAATATTCACCTACAAAGTCCTCGTTAACACTAACCCTATTCCAATCACAACAGCCACCAGCACTACCCTTTTGTACTCTCAAT GCAATCCCTTAAACCCTAGGACTAATGGGTTTGCTTTCTTTCGCTTACTATCATTCACTCCGGGGCACAGGCGTGCGCAGGACCCTGATGACCCATCCAA CCTGATGAAGGAAGATGGTGTCTCAGTTTGCTCTCAAATGTGGATAGAGAATTTTCGAGAACCAGATAGAATTGTGAGCAATTTGACCACTTATCTTCGC CGTTTTGAACTGTGGGTATTGGCTTATCAGAAAGTGTGTGCTGATGACATGGGAGCCTATATGCCCCGTAGTGCGATACAAAGGTCTGCATTGGAGGACT TGTTAGCTCTTAGAAATGCAGTTCTTGATAATAGGTTTAAGTGGGGTGCTAGGTTGGATTTTCTTATAAAGTCTCCGAAGGATAAGACTGACTATCAATC TTTGTCAAAGAGGAAGATTAAGGCAATTTTGACAACCACACAACCGGCAGCATTTCAGGATAAGATAGTTCAGGAGGTGTTATTTATGATTTTGGAGCCG ATATATGAAGCACGGTTTTCGCAAAAGTCTTTTGCTTTTAGACCTGGTAGAAATGCACATACGGTGTTGAGGGTGATTAGGAGGAATTTTGCTGGGTATC TGTGGTATATAAAAGGGGATTTCAGCACAATATTGGATGGAATGAAGGTGGGGTTAGTGATAAGTGCTTTAATGAGGGATGTGAGGGATAAGAAAGTGAT TGATTTGATAAAGGCAGCATTGACTACCCCTGTGATCACGAGTCGCATGGAAGAGCCAAAGAAGAAGACGAAGAGGAAGTATCAAAAGAAGAGGGTTTTG GCAGAGGATGAGCCAAAGCCAGATCCATATTGGCTAGACACCTTTTTTGGGTTTGCACCAGAGGAGGCAGAGAAGATTCCTTCATGGGGACACTGTGGGA TACTCAGTCCTCTTTTGGCTAACATCTGCTTAGATGAATTGGACCAGTGGATGGAGGGTAAGCTTAAGGAGTTTTATCGTCCTTCAAAGAGTGATGTCAT ATGGAATAGTCCAGAAGGGGAAGCAGAACAGGGGAATACATCCTGGCCAGAATTTGTGCCGACAAGTGGCCCAGACAAAACCAGGAAGATGGATTATGTA AGATACGGGGGTCACATCCTGATTGGTGTGCGAGGACCGAGAGCAGATGCAGCCACATTGAGGAAGCAATTGATTGAGTTTGTTGATCAGAAATACATGC TCAAGGTTGACAATGAGAGCCTCCCAATTGAGCACATAACTAAAGGTATAATGTTTCTTGATCATGTATTGTGCCGAAGAGTTGTGTATCCAACTCTACG GTACACTGCCACTGGTGGGAAGATCATTAGTGAAAAAGGTGTGGGCACCCTTTTGTCAGTCACAGCAAGCTTGAAACAATGCATTAAGCAATTTAGGAAG TTGAACTTTCTGAAGGGGGACAGGGATCCAGACCCACAGCCTTGTTTTAGAATGTTCCATGCCACTCAATCTCATACAAATGCACAAATGAACAAATTTT TGTCAACAATGGTTGAGTGGTTTAGATATGCTGACAATCGGAAGAAAATTGTGAACTTCTGTTCATACATTATAAGGGGTTCACTTGCAAAGCTATATGC TGCAAAATACAAGCTGCGTTCACGTGCAAAGGTGTATAAGATTGGTTCCCGGAATCTGAGTCGTCCTTTGAAGGAGAAGAAAGGGTCTTCACCTGACTAC CACAATTTGCTACGAATGGGCCTCGCCGAGTCAATTGATGGGCTTCAGTACACCAGGATGTCTCTTGTACCTGAGACTGATTACACCCCATTTCCAAGTA ATTGGATACCTGATCATGAGAAGGCATTGCTTGAATATATAAGCCTTGATGATCCAAAAACTCTCGAGGATCAACGATGTAGCATTAGAAAGCAAGGTCT GGTTTCATCTCAGGACTACATTTCAATGCTTGTTTGGAACTACAAGCGAAACGCTATTGCGATGGATCAGCTTTCCCTCATAAAAAGTGGTGGAAATAAC ACAGAAAAAGAACAACAGTTGCTTTTGGGCTCTGATAAAGATACTTATGATCAGAAAAGCAAAGAAGAGGAAGAACATGAAGATGGGTTTGACGTGGCAG AAATCTAA
AA sequence Show only first row Show all	>Potri.003G086801.1 pacid=42787499 polypeptide=Potri.003G086801.1.p locus=Potri.003G086801 ID=Potri.003G086801.1.v4.1 annot-version=v4.1 MHRRLAIFTYKVLVNTNPIPITTATSTTLLYSQCNPLNPRTNGFAFFRLLSFTPGHRRAQDPDDPSNLMKEDGVSVCSQMWIENFREPDRIVSNLTTYLR RFELWVLAYQKVCADDMGAYMPRSAIQRSALEDLLALRNAVLDNRFKWGARLDFLIKSPKDKTDYQSLSKRKIKAILTTTQPAAFQDKIVQEVLFMILEP IYEARFSQKSFAFRPGRNAHTVLRVIRRNFAGYLWYIKGDFSTILDGMKVGLVISALMRDVRDKKVIDLIKAALTTPVITSRMEEPKKKTKRKYQKKRVL AEDEPKPDPYWLDTFFGFAPEEAEKIPSWGHCGILSPLLANICLDELDQWMEGKLKEFYRPSKSDVIWNSPEGEAEQGNTSWPEFVPTSGPDKTRKMDYV RYGGHILIGVRGPRADAATLRKQLIEFVDQKYMLKVDNESLPIEHITKGIMFLDHVLCRRVVYPTLRYTATGGKIISEKGVGTLLSVTASLKQCIKQFRK LNFLKGDRDPDPQPCFRMFHATQSHTNAQMNKFLSTMVEWFRYADNRKKIVNFCSYIIRGSLAKLYAAKYKLRSRAKVYKIGSRNLSRPLKEKKGSSPDY HNLLRMGLAESIDGLQYTRMSLVPETDYTPFPSNWIPDHEKALLEYISLDDPKTLEDQRCSIRKQGLVSSQDYISMLVWNYKRNAIAMDQLSLIKSGGNN TEKEQQLLLGSDKDTYDQKSKEEEEHEDGFDVAEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46920			Intron maturase, type II famil...		Potri.003G086801 [exp]	0	1
AT5G09840			Putative endonuclease or glyco...		Potri.001G307700 [exp]	2.82	0.9257
AT5G46460			Pentatricopeptide repeat (PPR)...		Potri.001G354400 [exp]	3.87	0.9203
AT4G19890			Pentatricopeptide repeat (PPR-...		Potri.015G121700 [exp]	6.00	0.9028
AT4G12750			Homeodomain-like transcription...		Potri.014G173300 [exp]	6.92	0.9006
AT4G16835			Tetratricopeptide repeat (TPR)...		Potri.003G081700 [exp]	7.41	0.9115
AT1G77170			Tetratricopeptide repeat (TPR)...		Potri.006G164100 [exp]	7.48	0.9040
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Potri.010G086900 [exp]	7.48	0.9085
AT5G62370			Tetratricopeptide repeat (TPR)...		Potri.004G200900 [exp]	8.12	0.9106
AT1G52620			Pentatricopeptide repeat (PPR)...		Potri.001G139200 [exp]	8.36	0.8757
AT1G62260		MEF9	mitochondrial editing factor 9...		Potri.009G139200 [exp]	8.66	0.8953

Compare expression of checked genes

Potri.003G086801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.