Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17030 182 / 4e-57 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT4G38400 160 / 3e-48 ATEXPL2, ATHEXPBETA2.2, EXPL2, ATEXLA2 EXPANSIN L2, expansin-like A2 (.1) AT3G45970 156 / 2e-46 ATHEXPBETA2.1, ATEXPL1, ATEXLA1 EXPANSIN L1, expansin-like A1 (.1) AT3G45960 152 / 6e-45 ATHEXPBETA2.3, ATEXPL3, ATEXLA3 expansin-like A3 (.1.2) AT1G65680 116 / 4e-31 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT1G65681 107 / 2e-28 EXPB6 beta expansin 6 (.1) AT2G20750 105 / 4e-27 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1) AT4G28250 103 / 2e-26 ATHEXPBETA1.6, ATEXPB3 expansin B3 (.1.2) AT2G45110 102 / 6e-26 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT5G39290 83 / 1e-18 ATHEXPALPHA1.16, ATEXP26 EXPANSIN 26, expansin A26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G147200 [exp] 477 / 4e-173 AT4G17030 180 / 4e-56 expansin-like B1 (.1) Potri.003G083200 [exp] 215 / 8e-70 AT4G17030 311 / 1e-107 expansin-like B1 (.1) Potri.001G151500 [exp] 200 / 6e-64 AT4G17030 297 / 6e-102 expansin-like B1 (.1) Potri.009G141400 [exp] 190 / 2e-59 AT4G38400 349 / 5e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.004G181700 [exp] 184 / 2e-57 AT4G38400 348 / 3e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.014G066300 [exp] 120 / 1e-32 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.019G101900 [exp] 111 / 3e-29 AT4G28250 367 / 1e-129 expansin B3 (.1.2) Potri.013G134300 [exp] 110 / 4e-29 AT4G28250 402 / 2e-143 expansin B3 (.1.2) Potri.006G108000 [exp] 83 / 1e-18 AT2G40610 379 / 2e-134 expansin A8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030931 [exp] 434 / 4e-156 AT4G17030 183 / 2e-57 expansin-like B1 (.1) Lus10001244 [exp] 370 / 2e-130 AT4G17030 153 / 3e-45 expansin-like B1 (.1) Lus10042095 [exp] 355 / 1e-123 AT4G17030 139 / 3e-39 expansin-like B1 (.1) Lus10040115 [exp] 318 / 7e-109 AT4G17030 123 / 4e-33 expansin-like B1 (.1) Lus10011013 [exp] 214 / 9e-70 AT4G17030 302 / 2e-104 expansin-like B1 (.1) Lus10001009 [exp] 212 / 2e-68 AT4G17030 308 / 2e-106 expansin-like B1 (.1) Lus10000958 [exp] 198 / 4e-63 AT4G17030 303 / 1e-104 expansin-like B1 (.1) Lus10011012 [exp] 196 / 2e-62 AT4G17030 219 / 2e-71 expansin-like B1 (.1) Lus10003336 [exp] 192 / 1e-60 AT3G45970 320 / 6e-111 EXPANSIN L1, expansin-like A1 (.1) Lus10001010 [exp] 190 / 6e-60 AT4G17030 223 / 6e-73 expansin-like B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.003G087000.1 pacid=42786896 polypeptide=Potri.003G087000.1.p locus=Potri.003G087000 ID=Potri.003G087000.1.v4.1 annot-version=v4.1 ATGGCTCCTTCTCTGCGGTTCCTTTTGTTTCTTTCAGCAACCTTGTTCTTTATGCAGACTCTGACAGAGGCTGCAACATGTAGCGACTGTTTCATTCATT CTCGGGCAGCTTACTATCCAAATTCTGATGAAAATGGAACAGATACTGGCAGATGTGGATATGGTTCATTTGGAGCAACACTGAATGGTGGGGATGTAGC AGCCGCATCTGACCTCTACCGTGATGGTGTCGGTTGTGGTGCTTGCTATCAGGTAAAGTGCACCAACAGTTACTATTGCACTGACAACGGAGTGACCATT GTTATAACTGACCAAGGATCAAGTGATAATACCGACTTTATTCTCAGCAGACGAGCCTTCGGTCGGATGGCTCAAACCACAGATGCAGCTGCATCTTTAT TAGCCCTCGGAGTAGTTGATATTGAATATAGACGTGTTTCATGCAGCTATCCATACAAAAATATAACCATCAAAATCGACGAGAACAGCAACTATCCTTA TTATCTGGGTTTTGTCATTTGGTATCAACAAGGAAGAAGCGATATTACTGCTGTTCAGCTATGCGAGACGCAAAATTTTGTATGCAAGCTCTTGGACAGA AGCTACGGATCTGTATGGACAACTACCTCTCCCCCCAGTGGACCCTTGTCACTAAGAATGTTATTCAGTGATGAAAATGGAGATGAGACATGGGTAGTTC CAGTCAACAACATACCTAATGACTGGAAAGCTGGAGAAACATATGATACAGGAGTACAAGTAAACTTATAA
AA sequence Show only first row Show all	>Potri.003G087000.1 pacid=42786896 polypeptide=Potri.003G087000.1.p locus=Potri.003G087000 ID=Potri.003G087000.1.v4.1 annot-version=v4.1 MAPSLRFLLFLSATLFFMQTLTEAATCSDCFIHSRAAYYPNSDENGTDTGRCGYGSFGATLNGGDVAAASDLYRDGVGCGACYQVKCTNSYYCTDNGVTI VITDQGSSDNTDFILSRRAFGRMAQTTDAAASLLALGVVDIEYRRVSCSYPYKNITIKIDENSNYPYYLGFVIWYQQGRSDITAVQLCETQNFVCKLLDR SYGSVWTTTSPPSGPLSLRMLFSDENGDETWVVPVNNIPNDWKAGETYDTGVQVNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Potri.003G087000 [exp]	0	1
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.012G096800 [exp]	3.46	0.9786
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Potri.014G098000 [exp]	4.00	0.9492
AT3G04350			Plant protein of unknown funct...		Potri.002G256802 [exp]	6.00	0.9623
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.002G228400 [exp]	6.24	0.9551
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Potri.012G142000 [exp]	6.92	0.9731
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Potri.001G147200 [exp]	10.95	0.9360
AT4G37290			unknown protein		Potri.007G049400 [exp]	11.87	0.9772
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Potri.001G070900 [exp]	16.97	0.9103
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Potri.002G224100 [exp]	19.07	0.9682	ACO2,ACO1.1
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413400 [exp]	22.27	0.9355

Compare expression of checked genes

Potri.003G087000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.