Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29230 368 / 7e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 372 / 2e-119 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18840 347 / 4e-112 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G45350 346 / 4e-111 CRR4 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 342 / 9e-109 MEF22 mitochondrial editing factor 22 (.1) AT3G15930 338 / 3e-107 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G37570 333 / 5e-107 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G29760 338 / 8e-107 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G38010 321 / 5e-102 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G44880 320 / 1e-101 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G121400 [exp] 391 / 1e-129 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 393 / 1e-127 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G207500 [exp] 372 / 9e-122 AT5G37570 602 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G125500 [exp] 365 / 1e-118 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G217900 [exp] 367 / 2e-118 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.009G044700 [exp] 368 / 4e-118 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G068800 [exp] 365 / 5e-118 AT2G45350 735 / 0.0 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G258766 [exp] 357 / 3e-116 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G019500 [exp] 358 / 3e-115 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030932 [exp] 712 / 0 AT3G29230 318 / 3e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 387 / 1e-125 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021069 [exp] 363 / 6e-119 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021068 [exp] 363 / 6e-119 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 369 / 2e-118 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017243 [exp] 358 / 4e-117 AT1G13410 539 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019797 [exp] 354 / 4e-114 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014113 [exp] 353 / 1e-113 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 351 / 2e-111 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003422 [exp] 337 / 6e-108 AT2G44880 679 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.003G087100.1 pacid=42787521 polypeptide=Potri.003G087100.1.p locus=Potri.003G087100 ID=Potri.003G087100.1.v4.1 annot-version=v4.1 ATGACTATAAACCACAAATACTACAAACACTCCCTTTCTTTGAACAAATTCCTCAAATCCAAGAAAAACCTCTCTAAAACCCCTCCAAAACTCTTTCCTA ATGACCCAACGCCCCAACAAATCACACAAACGATTAGCAACAGCTCAAATGCACCCACATTAGATCTTAATCACCCCATCTTGCAAAAACTGGAACAATC ATGTACTAACATCAAACAATTCAATCAAATCCACACCCAACTTACAGTCTTGGGCCTTTTCCAACACCCTTTCGCCGCGAGTCGTTACATCAAGAAGCTC TGTGCTTGTTTAAATTCAGTTTCTCATTGCGTTTCTCTGTATAATCACATTGAAGAACCTGATGCTTTTATGTGTAATACTATAATGAGAAGTTTTGTGA ATGTGAATGATCCTTTTGGTGCTTTGAGATTTTATTATGAAAAAATGATTGCTAAGTGGGTTTTGCCTAATCATTACACATTTCCTCTTGTTGCTAAGGT TTGTGCTGATATTGGGTCTTTGAGAGAAGGTCAAAAGGTTCATGCTTTAGTAGTGAAATTTGGGTTTGAGTTGGATTTGTTTGTGAGGAATTCTTTTATA CGTTTTTACTCTGTTTGTGGGAGGACTTCGGATGCGAGGATGGTGTTTGATAATGGGTTTGTGTTGGATTTGGTGAGTTGGAATTCGATGATTGATGGTT ATGTGAAGAATGGAGAGTTGGGTCTTGCACGTGAGATCTTTGATGAAATGTATGAGAGAGATATTTTCACTTGGAATTCAATGATTTCTGGGTATGTGGG AGTCGGAGACATGGAGGCGGCTAGAGGATTGTTTGACAAAATGCCATCCAGAGATGTTGTGTCTTGGAATTGCATGATTGATGGGTTTGCAAGGATAAAA GATGTTTCAATGGCAGCTAAGTTTTTTGATGAGATGCCTTTGAGGAATGTGGTTTCTTGGAATGTTATGTTGGCTCTTTATCTAAGGTGCAAGAAGTATA GTGATTGCTTGAGATTTTTTGACATGATGGTTGGAGGGGACTTTGTGCCTGATGAAGCATCTCTTGTAAGTGTCTTGACTGCATGTGCGGAACTGAAAAT GCTTGATCAAGGAAAATGGGTTCATTCTTATATGAAGGATAATGGGATTAAGCCTGATATGCTACTCTCAACTGCTCTATTAACCATGTATGCAAAATGC GGGGCAATGGATTTGGCTAGAGAAGTGTTTGATAAGATGCCTGAAAAAAGTGTGGTGTCATGGAATTCTATGATCATTGGATACGGTATACATGGACATG GAGACAAAGCGCTAGAAATGTTCAGGGAGATGGAGAAGGGAGGTCCTATGCCAAATGATGCTACTTTTATGAGTGTTTTGTCTGCATGCTCACATTCAGG GATGGTTTGGAATGGTTGGTGGTACTTTGATCTAATGCATAGAAAATATAGGATTCAACCAAAGCCTGAGCACTATGGTTGTCTGGTTGATCTCCTTGGC CAGGCAGGTTTGAAAGAACCATCAGAAGATCTCACAAGGAAGACGCATACAGAGGTAGAGCCAACTTTATGGGGAGATCTTCTTTCAGCTTGTAGGGCCC ACTGTATTTCAGAACCTGGAGAGATCCTGGCCAAGCAACTGATTAAGTTATTTCCAAATCATGTTGTTCCATATTTGTTATTATCAAACACATATGTCGC TGAAGGGAGGTGGGATGATGTAGAAAATTTGAGAATGACTCTGAAGAATAAGACTCTTAATTCAAAAATGGTTTTCACTTCAAGGAGGCACTCAATGTTG AGTGAGGCGGCTGCTCAGATCAAATTGTCTAATATAGATTCTATTAGGACCTGA
AA sequence Show only first row Show all	>Potri.003G087100.1 pacid=42787521 polypeptide=Potri.003G087100.1.p locus=Potri.003G087100 ID=Potri.003G087100.1.v4.1 annot-version=v4.1 MTINHKYYKHSLSLNKFLKSKKNLSKTPPKLFPNDPTPQQITQTISNSSNAPTLDLNHPILQKLEQSCTNIKQFNQIHTQLTVLGLFQHPFAASRYIKKL CACLNSVSHCVSLYNHIEEPDAFMCNTIMRSFVNVNDPFGALRFYYEKMIAKWVLPNHYTFPLVAKVCADIGSLREGQKVHALVVKFGFELDLFVRNSFI RFYSVCGRTSDARMVFDNGFVLDLVSWNSMIDGYVKNGELGLAREIFDEMYERDIFTWNSMISGYVGVGDMEAARGLFDKMPSRDVVSWNCMIDGFARIK DVSMAAKFFDEMPLRNVVSWNVMLALYLRCKKYSDCLRFFDMMVGGDFVPDEASLVSVLTACAELKMLDQGKWVHSYMKDNGIKPDMLLSTALLTMYAKC GAMDLAREVFDKMPEKSVVSWNSMIIGYGIHGHGDKALEMFREMEKGGPMPNDATFMSVLSACSHSGMVWNGWWYFDLMHRKYRIQPKPEHYGCLVDLLG QAGLKEPSEDLTRKTHTEVEPTLWGDLLSACRAHCISEPGEILAKQLIKLFPNHVVPYLLLSNTYVAEGRWDDVENLRMTLKNKTLNSKMVFTSRRHSML SEAAAQIKLSNIDSIRT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.003G087100 [exp]	0	1
AT5G57450		ATXRCC3, XRCC3	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.018G093100 [exp]	3.87	0.8906
AT1G28690			Tetratricopeptide repeat (TPR)...		Potri.004G054000 [exp]	3.87	0.8687
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Potri.001G217600 [exp]	11.13	0.8867
AT5G58920			unknown protein		Potri.009G042300 [exp]	18.38	0.8442
AT1G80550			Pentatricopeptide repeat (PPR)...		Potri.005G147200 [exp]	19.62	0.8666
AT1G71060			Tetratricopeptide repeat (TPR)...		Potri.010G114700 [exp]	24.08	0.8686
AT1G32415			pentatricopeptide (PPR) repeat...		Potri.003G087300 [exp]	24.65	0.8387
AT4G38890			FMN-linked oxidoreductases sup...		Potri.009G125500 [exp]	26.40	0.8397
AT5G19020		MEF18	mitochondrial editing factor ...		Potri.010G029900 [exp]	28.37	0.8562
AT2G33760			Pentatricopeptide repeat (PPR)...		Potri.004G043400 [exp]	30.44	0.8515

Compare expression of checked genes

Potri.003G087100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.