Plant FIBer expression Database

Potri.003G087200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G31870 418 / 1e-140 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G147100
[exp]
154 / 3e-42 AT1G31870 111 / 2e-27 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034532
[exp]
446 / 3e-152 AT1G31870 451 / 4e-154 unknown protein
Lus10033140
[exp]
390 / 2e-128 AT1G31870 454 / 4e-153 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09736 Bud13 Pre-mRNA-splicing factor of RES complex
Representative CDS sequence
>Potri.003G087200.6 pacid=42785448 polypeptide=Potri.003G087200.6.p locus=Potri.003G087200 ID=Potri.003G087200.6.v4.1 annot-version=v4.1
ATGGCGTCTTCGACTATGGGATCCAAGTCATTGAAAGAATATTTGAAAAAATATGGAAGTGACAATCAAGAAGAAGAGAAGAAAGTGAAAAAGAAGAAGA
AGAAAGTTAAACCGAATGCCTCTGGTGTTTTAGTTGTGGATGAAGACCCTGTTTGGCAAAAGCCAGTGAAGCTTGAAGAGGAGGAAAATGATTCAGCTGA
TGACGAGAATCCTCAAGTTGATGAAGACATAGAAGTTAAACGAATGAAGAGGCTGGAGCTAATTAGAGCTCGACGTGCTTACAATGCAATTGCTGAGGAT
GGAAGTGGTTGGGTTATATTACCTCCTAACCATGCCAATTCTGCTGATCCTTACCCTGATATGTCCCCTCTTCATAAAAGGAAGGTTCGGAATGACACAC
CCTCACCTGAGCATGAAGGGAAGCCTTTGCATAATGGTGGAGATGATGCAGATTTGTCTCCTCCACGGCAACAACAGAGACAGCACCATAGTCCATCACC
TGCTCCTGATACAAATTTGAATTCAGATCTGTCGCCACCCCGTAATAGAAGGTATCGAAATGATACACCATCTCCTGAGCCGCGGTTGAAGCCTTCAAGA
GAAGCTAGTGATTTGTCACCACCACGAAGGCAGCAAAAACACCATCATTCTCCATCACCCAAGCCCTATACAAAGTCTAAACACACCAGTGTTCTGAATT
CTGATTTGTCACCACCACGAAGACGGAGGACTGATACTGAATCACCTAAATTGAAGCCTTTGAAAGAAGATACTGATTTGTCTCCTCCAAGACAACAGCG
GCGACGACACTATACTCCATCACCAAAACCCGAGCCAGATCTTTCACCCCCAAGGAAAAGAAAGAAGGATGTTGGGAGATCAGGATTGCCTGATAATTCT
CATTTATCACTACAGCTTTCAACTCAGAGTGGTAATTCACGTGCATCCATGGCTCAAGACATTTCTCCACCAAGGAAAAACAGGAAAGAATCATCTGATC
CAGTTTCTTCAAAGGAACCGCCAAAAACTGGTCTGATCACTGGTCGTGATATGCGGGAAGAAATTAAAACTAAGAAGGAAGCGTCATTGTTGTTTGACAA
GATGGATCCTTCTATAAGTGGACGGGGTGTTGAACCTGTATACCGTGATAAGAAAACAGGAGAGCGCATATCAAAGGATGATTACTTGAAATCAAAACAA
AAAGTAGAGGAAAAACCCAAGGAAAAGAAGTTAGAGTGGGGAAAGGGCTTGGCTCAAAAGCGGGAAGTTGAAACTAGGCTGGAGGAGTTAGAGCTTGAGA
AGGACAAGCCATTTGCACGGACTAGGGATGATCCGGAACTTGACAAAATGCTGATGGAAAGAGTAAGATGGGGCGATCCTATGGCACATTTGGTCAAGAA
AAAGCATTCTGAACTGGATCTTGCAGACCTAGGGGATAGCGAGAAGATGAAGGAATCAGGATTTATAATTCCCCAGGACATACCTAGTCACAGCTGGATA
AAACGAGGATTAGATGCTGCTCCAAATCGATATGGTATAAGACCAGGAAGACATTGGGATGGGGTGGATCGAAGTAATGGATATGAGAAACAACTTGTCA
AACGGGTGAATGAGAAACAAGCTACAGAGAGGGAAGCCTATCTTTGGTCTGTGTCTGATATGTAA
AA sequence
>Potri.003G087200.6 pacid=42785448 polypeptide=Potri.003G087200.6.p locus=Potri.003G087200 ID=Potri.003G087200.6.v4.1 annot-version=v4.1
MASSTMGSKSLKEYLKKYGSDNQEEEKKVKKKKKKVKPNASGVLVVDEDPVWQKPVKLEEEENDSADDENPQVDEDIEVKRMKRLELIRARRAYNAIAED
GSGWVILPPNHANSADPYPDMSPLHKRKVRNDTPSPEHEGKPLHNGGDDADLSPPRQQQRQHHSPSPAPDTNLNSDLSPPRNRRYRNDTPSPEPRLKPSR
EASDLSPPRRQQKHHHSPSPKPYTKSKHTSVLNSDLSPPRRRRTDTESPKLKPLKEDTDLSPPRQQRRRHYTPSPKPEPDLSPPRKRKKDVGRSGLPDNS
HLSLQLSTQSGNSRASMAQDISPPRKNRKESSDPVSSKEPPKTGLITGRDMREEIKTKKEASLLFDKMDPSISGRGVEPVYRDKKTGERISKDDYLKSKQ
KVEEKPKEKKLEWGKGLAQKREVETRLEELELEKDKPFARTRDDPELDKMLMERVRWGDPMAHLVKKKHSELDLADLGDSEKMKESGFIIPQDIPSHSWI
KRGLDAAPNRYGIRPGRHWDGVDRSNGYEKQLVKRVNEKQATEREAYLWSVSDM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G31870 unknown protein Potri.003G087200
[exp]
0 1
AT3G60850 unknown protein Potri.014G070200
[exp]
1.73 0.8777
AT1G33520 MOS2 modifier of snc1, 2, D111/G-pa... Potri.001G129700
[exp]
4.00 0.8602
AT2G28390 SAND family protein (.1) Potri.004G211200
[exp]
7.07 0.8179
AT3G62240 C2H2ZnF RING/U-box superfamily protein... Potri.014G114900
[exp]
8.88 0.7796
AT1G51450 ASH2R, TRO ARABIDOPSIS Ash2 RELATIVE, TRA... Potri.009G051400
[exp]
9.16 0.8474
AT5G66540 unknown protein Potri.012G082600
[exp]
12.04 0.8429
AT5G62030 diphthamide synthesis DPH2 fam... Potri.019G041300
[exp]
12.72 0.8422
AT1G28280 VQ motif-containing protein (.... Potri.004G044800
[exp]
12.96 0.8135
AT3G58630 Trihelix sequence-specific DNA binding ... Potri.001G113600
[exp]
14.69 0.8028
AT3G49601 unknown protein Potri.006G233000
[exp]
15.49 0.8330

Potri.003G087200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.