Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32415 853 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 454 / 3e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G53600 440 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G56690 394 / 4e-127 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09410 391 / 1e-125 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G22070 384 / 3e-122 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G62260 380 / 4e-122 MEF9 mitochondrial editing factor 9 (.1) AT2G35030 365 / 8e-117 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 348 / 1e-109 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46460 348 / 2e-109 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048800 [exp] 462 / 1e-152 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G019900 [exp] 450 / 4e-148 AT4G02750 542 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G006400 [exp] 426 / 4e-139 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G005400 [exp] 411 / 2e-133 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G139200 [exp] 382 / 7e-123 AT1G62260 749 / 0.0 mitochondrial editing factor 9 (.1) Potri.007G085500 [exp] 382 / 2e-121 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.005G187800 [exp] 362 / 1e-111 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G038400 [exp] 348 / 2e-110 AT2G35030 701 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G027800 [exp] 352 / 5e-110 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013540 [exp] 419 / 9e-136 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030549 [exp] 414 / 5e-134 AT4G02750 468 / 2e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013149 [exp] 397 / 6e-128 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 392 / 5e-125 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10012514 [exp] 374 / 6e-121 AT1G62260 689 / 0.0 mitochondrial editing factor 9 (.1) Lus10012897 [exp] 368 / 2e-117 AT4G02750 469 / 4e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 362 / 3e-114 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019731 [exp] 357 / 4e-112 AT2G13600 436 / 3e-143 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 339 / 2e-106 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003857 [exp] 336 / 3e-105 AT4G02750 404 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.003G087300.1 pacid=42787372 polypeptide=Potri.003G087300.1.p locus=Potri.003G087300 ID=Potri.003G087300.1.v4.1 annot-version=v4.1 ATGCCCGCCTTTTGTTTCAAAACCCTGAAGATCTCTCTTTCAAAAATTTCACTCAAACTTCGATTTTTTTCACCCCATGTTCGGTTCCTTAAGTCCCAAT CAGAAGTTTCCAAAACCCATTACTCTAAACTCACATTAGATGACTCTCAACTTCTCTGCATGCTCTCTCAACAAAAACTCCAACAAGCACGCAACCTACT TGACAAGTTTCCCGAGAGAAGCCGCCATAGCCGAATTGCTCACTGGACTTCTTTGCTTACAAAATACTCAAGAATTGGCTTCATTGACGAATCCAGAGTT CTTTTTGATATCATGCCTGAGAGAAATATTGTTAGTTACAACGTGATGCTGTCAGGGTATTTGCAGTGTGGGAGGCTGAGTGAGGCAAGGGGGTTGTTTG AAGAGATGCCAGAGAGGAATGTTGTTTCATGGACTTCGATGCTTTGTGGGTTAGCTGATGCAGGAAGGATTTGTGAGGCAAGGGAATTGTTTAAGGAGAT GCCAGAGAGGAATGTTGTTTCGTGGAATGCAATGGTTGCTGGGTTGATTAAGAATGAGGATTTGGAGGAAGCAAGGCGGGTTTTTGATGAGATTCCAGAG AAGAATGTGGTTTCTTGGAATGCTATGATTAAGGGGTTTGCAGAGAATGGTAAAATGGAGGAAGCCAGGGTTTTGTTTGAGGAGATGGAGGATAGGAATG TGATAACCTGGACTACTATGATAGCAGGTTATTGCAGGATAGGTGATGTTCGGGAGGCTTATTGTTTTTTTTGTAGAATTCCTGAGAGAAATGTTGTATC TTGGACAGCCATGATTAGTGGGTTCACTTGGAATGGTTACTATGGAGAAGCATTATTGCTTTTTCTTGAGATGAAGAGGAGGTCCAATATAGCACCAAAT GGAGAGACCTTCATTTCACTTGCTTATGCTTGTGCTGGTATGAGGTTTCATCATCTTGGCAAGCAGTTACATGCTCAACTGATAATTAATGGGTTGGAAT ATGAGGATTATGATGGCAGGATAGCCAAGAGCCTTATTCACATGTACTCTTTATTTGGTGCCATGGATTATGCACACTATGTCTTTAACAAGAACTTAAA TAGTCATGCTGTTCAGTCTTGTAATCATATGATTAATGGTTATACTCGGATTGGACAAGTGGAAAAGGCTCGAGAATTGTTTGATACTATACCTGCTCGG GACAACATCACATGGACTTCAATGATTGTTGGGTATTTTGATATTGGAAATGTTTCTGAGGCTTGCTATCTATTCGAAAACATGCCTGATAAGGATTCGG TTGCATGGACATCAATGATTTCAGGGCTTGTCCAAAATGAGCTTTTCCTTAAGGCAACCTCTTTCCTCTTGCGAATGCTGGCTCATGGTGCTCCACCATT AAGTTCTACTTATGCTATTCTTTTTGGAGCAGCAGGTGCAATTGCTCATCTTGATTTTGGGAGGCAGTTGCATAACATGCTGATGAAAACACTATCAGAC TGTGACTTGATTCTTAGTAATTCTCTGATCTCAATGTATGCGAAATGTGGGGAGATACATGATGCATATAGCATATTCACAAACATGATTTATCGAGACT TAATTTCTTGGAATACCATGATTATGGGATTAGCACATCATGCTCTGGCAAATGAAACACTGAAAGTTTTTGAAACCATGCTCCAATCCGGGACTCGCCC AAATTCAGTTACATTTTTGGGAATCCTGTCAGCATGTAGCCATGCTGGGTTAGTTAGTCAAGGATGTAAATTATTTAAAGCAATGAGAGACGTTTATGCA ATTCAACCAGGTTTGGAGCATTACATTTCTATGATCAATCTCTTGGGAAGAGCAGGGAAAGTAAGAGAAGCAGAAGAGCTCATATTGGGACTGCCTTTCG AAACAAATCATGCTATCTGGGGGGCATTGCTTGGTGTATGTGGGGTTGCTGAGAAAAACGCTGACATTGCTCAACATGCTGCCAGGCGACTCCTTGAGTT GGATCCTTTGAATGCACCAGCTCATGTTGCACTCTGCAACATATATGCAGCCTGTGGCAAGCATATTGAGGAGCAAAAATTAAGGAAGGAGATGGGTTTG AAGGGTGTGAGGAAGGTCCCTGGATGCAGTTGGATAGTGCTAAATGGAAATGTTTGTGTCTTTCTATCAGGAGATAAGCTAGATCCTGAAGCAGATGAAA TGCTATTATTCTTATTTGAGTCTGGTGATGGATGA
AA sequence Show only first row Show all	>Potri.003G087300.1 pacid=42787372 polypeptide=Potri.003G087300.1.p locus=Potri.003G087300 ID=Potri.003G087300.1.v4.1 annot-version=v4.1 MPAFCFKTLKISLSKISLKLRFFSPHVRFLKSQSEVSKTHYSKLTLDDSQLLCMLSQQKLQQARNLLDKFPERSRHSRIAHWTSLLTKYSRIGFIDESRV LFDIMPERNIVSYNVMLSGYLQCGRLSEARGLFEEMPERNVVSWTSMLCGLADAGRICEARELFKEMPERNVVSWNAMVAGLIKNEDLEEARRVFDEIPE KNVVSWNAMIKGFAENGKMEEARVLFEEMEDRNVITWTTMIAGYCRIGDVREAYCFFCRIPERNVVSWTAMISGFTWNGYYGEALLLFLEMKRRSNIAPN GETFISLAYACAGMRFHHLGKQLHAQLIINGLEYEDYDGRIAKSLIHMYSLFGAMDYAHYVFNKNLNSHAVQSCNHMINGYTRIGQVEKARELFDTIPAR DNITWTSMIVGYFDIGNVSEACYLFENMPDKDSVAWTSMISGLVQNELFLKATSFLLRMLAHGAPPLSSTYAILFGAAGAIAHLDFGRQLHNMLMKTLSD CDLILSNSLISMYAKCGEIHDAYSIFTNMIYRDLISWNTMIMGLAHHALANETLKVFETMLQSGTRPNSVTFLGILSACSHAGLVSQGCKLFKAMRDVYA IQPGLEHYISMINLLGRAGKVREAEELILGLPFETNHAIWGALLGVCGVAEKNADIAQHAARRLLELDPLNAPAHVALCNIYAACGKHIEEQKLRKEMGL KGVRKVPGCSWIVLNGNVCVFLSGDKLDPEADEMLLFLFESGDG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32415			pentatricopeptide (PPR) repeat...		Potri.003G087300 [exp]	0	1
AT5G39960			GTP binding;GTP binding (.1)		Potri.004G230600 [exp]	1.41	0.9138
AT5G13270		RARE1	REQUIRED FOR ACCD RNA EDITING ...		Potri.001G066100 [exp]	4.12	0.9155
AT4G38890			FMN-linked oxidoreductases sup...		Potri.009G125500 [exp]	6.32	0.8785
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Potri.001G217600 [exp]	8.83	0.9091
AT1G28690			Tetratricopeptide repeat (TPR)...		Potri.004G054000 [exp]	14.00	0.8527
AT2G34040			Apoptosis inhibitory protein 5...		Potri.004G052300 [exp]	14.49	0.8337
AT2G46200			unknown protein		Potri.014G091400 [exp]	14.96	0.8507
AT3G04750			Tetratricopeptide repeat (TPR)...		Potri.017G153700 [exp]	15.87	0.7937
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.018G040100 [exp]	16.73	0.8877
AT5G19020		MEF18	mitochondrial editing factor ...		Potri.010G029900 [exp]	17.14	0.8855

Compare expression of checked genes

Potri.003G087300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.