Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21700 606 / 0 Protein of unknown function (DUF2921) (.1) AT1G52780 157 / 4e-39 Protein of unknown function (DUF2921) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G052500 [exp] 635 / 0 AT4G21700 638 / 0.0 Protein of unknown function (DUF2921) (.1) Potri.001G175600 [exp] 172 / 1e-43 AT1G52780 1107 / 0.0 Protein of unknown function (DUF2921) (.1) Potri.006G187000 [exp] 114 / 2e-25 AT1G52780 424 / 4e-131 Protein of unknown function (DUF2921) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030937 [exp] 738 / 0 AT4G21700 504 / 3e-163 Protein of unknown function (DUF2921) (.1) Lus10005493 [exp] 621 / 0 AT4G21700 625 / 0.0 Protein of unknown function (DUF2921) (.1) Lus10006025 [exp] 599 / 0 AT4G21700 627 / 0.0 Protein of unknown function (DUF2921) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11145 [poplar] [flax] DUF2921 Protein of unknown function (DUF2921)
Representative CDS sequence Show only first row Show all	>Potri.003G087400.1 pacid=42784962 polypeptide=Potri.003G087400.1.p locus=Potri.003G087400 ID=Potri.003G087400.1.v4.1 annot-version=v4.1 ATGTTCAAACCAGCCTTACCATCCTCATTATCCAAGAAATATCAGATGATGACCTCTAATTCCTCTCCAAGCACATGGTGTTATCTATCATGGCTTCACG TTGCAATGTTCTTGGTCCTTTCGACCACCTTCTACACCCCCATGGTCTCTTGCTCCAAAATTGACATCCCTAATTACAACAAACACTGTGCCTCTATTGT CCCTGAATCAACTCCCAATGATGTTCCCGAAATCACCACCATCCCTTTTGCTGCAGAGCAAGGTGGGTACTTTCTTGGTGGGGAAGACATATTGAATCAT CCAAACTCATCTCGTTACCATTATCCAACGAGTAACAGGAGAGAGCTATTCATTCATACCCACAGTGTCTATAGTACTGATGTTGATGATGTCTTTAAGG TTGAGGCGAGTTTGATCCTGAGAACCTCGGATATGGAGTTTTACGTGTCCGACGACAGATCTCCGAGGGGTGCTTTGAGTTTTGAAGTAAAAGGGTTCTG GTCAATATCTACCGGCAAGCTTTGCATGGTGGGCTCTGGTTCTACTTACTCAGAGGAGGGTAAACATGTTGTTCTTGCCGCTCTACTCAAGCTTGATGAA GTTAGAAAATCAAGCACCATCAGTAGTTTGGTGAGGGGAATATTGGAAAGCTCGAGCACTGCTGGTGATTCAGGATATTTTAATCCAATCTCCTTGTTGA TGATCCCTCAAAATAATTACGAGTTCACTGAGGTTGGAAAAGCACTCGATCATGTCTGTACTGGGGGGATTGTTGTTCCAAAGAATTTGTCACTAAGCTT AAAGCTGAGTACACGTATTTGCAATGCATTCTCTCGTTGGCATACTTTTTTTAAACTGGAGTATTCAAGTGGTTGCAAGTCCACAAGTAGTTGCAATCCT TTTGGTGAGGGTGTTGGACATTTACCCCAAATCATGTCCTTGAAATTAATTCAATGTTTAGAAGATAAACGAAGATTGAGATTCCTGATAGAATTCCACA ACAGTCGCTATGGTGATTATTACCACCCCTTCACTCCAAACACAACATTGGTAGCGGAAGGATCATGGGATGTGAATAAGAATCAGCTATGTGTTGTTGG CTGTCGAATCTTGAATTCAGCCAACTCGTTCAATAAATCTCATATTGAGGATTGTTCAGTGAGGTTGAGTTTCAGATTCCCTGCCGTTTGGTCAATCAGA AATACTAGTGGTATGATGGGGCATATTTGGAGTAACAAACGTGAGAATGATCCGGGTTACTTCAATACGATCATGTTTCGAAGTCATGAAAATTTTGTAG CTGGGATCCCCGGGTCGAAGTACCAGTACACTGTTGTTGATAAAGCAAGAAAGTCATGCTCAGAGAAGCAGCCTAGAAAGAACAAAGGAAAGCGGCATCC AGATGCAAATTCGAATGACATGAAGTTCAATATGGTGGTCAGGGACTCCAAGAGAAGAAGAATAGGATGGGGCTACTCTCAGCCCATCGCTGTGGGTGAT CAAATTTCTCGACGTAACGACTTTGTGATTTCATCAAGCTTGAGGGCTGCTTACTCTCCGGTTAAAGGAAAAACCAACCACAGCATCCCACTGAACATCA GCTACGGCATGAGCTTCCAGCTGAATGAGTCTACTTATGTTCAAGTCTTTTCTGAAGGAATTTATGATGCTGAAACAGGAAAACTTTGTATGGTGGGCTG CAGATATCTTGACTCAAACAATCGGACATCAGACAATGATTCAATGGACTGTAAGATTCTTATAAATGTCCAGTTCCCTCCAGTAGATTCAAATGATTAT ATCCAGGGAACCATTGAAAACACTCGGAAAAAATCCGATCCTCTGTACTTCGAGCCTCTTTCTTTTTCCGCAGCTTCATTTTACAGTCAGCATTCGAGGG AGTCAATATGGAGGATGGATCTGGAGATCATCATGTCTTTGATCTCTAATACTCTCGTTTGTGTCTTTGTGGGATACCAGATCTCGTATGTGAAAAAGCA TCCCGCTGTTTTCCCTTTCATCTCACTCCTCATGCTTCTAGTCCTTACTCTCGGGCACATGATCCCTCTAATGCTGAATTTTGAAGCTTTGTTTGTGCCA AAGGAAAGTCGCACAACATTCCTTCGAAGGAGTGGTGGATGGGTGGAAGCGAATGAGGTAATTGTAAGGGTAATCACGATGGTATCTTTTCTGCTGCAAT TCCGACTTCTGCAGCTTGTATGGTCTGCACGATTCGCTGATGGGAAGCGAAAGGCGTTCTTGGCTGCTGAGAAGAAGACACTCTATTTGTCTTTGCCACT ATATATATCTGGAGGTTTAATTGCTTTGTATGTGAATTGGAGGAACAACAAGGTTGGTGAGGGCATGGAGTACGCTTACAGCAGCACTTATCAGAGTTCC CTTTGGGTGGATTTAAGATCTTATGGTGGTTTGGTACTCGATGGTTTTCTCTTCCCTCAAATCCTCCTCAACATTTTCCATAACTCCACAGAAAATGCCC TCTCTCGTTTCTTCTACATAGGAACCACATTTGTGCGCTTGCTCCCACATGCATACGATCTATACAGGGCTAACTACTATGTTGAAGATTTTGATGGATC ATACATGTATGCCGACCCAGGTGGAGATTATTATTCCACTGCCTGGGATGTCATTATTCCTCTAGTGGGCCTTCTTTTTGCTGCTATCATCTACCTGCAG CAGCGCTTCGGTGGTCGTTGTTTCATGCCAAAAAGATTCAAGGAGCTAGAAGGATATGAGAAAGTACCAGTGGCTAGTGATGCATAA
AA sequence Show only first row Show all	>Potri.003G087400.1 pacid=42784962 polypeptide=Potri.003G087400.1.p locus=Potri.003G087400 ID=Potri.003G087400.1.v4.1 annot-version=v4.1 MFKPALPSSLSKKYQMMTSNSSPSTWCYLSWLHVAMFLVLSTTFYTPMVSCSKIDIPNYNKHCASIVPESTPNDVPEITTIPFAAEQGGYFLGGEDILNH PNSSRYHYPTSNRRELFIHTHSVYSTDVDDVFKVEASLILRTSDMEFYVSDDRSPRGALSFEVKGFWSISTGKLCMVGSGSTYSEEGKHVVLAALLKLDE VRKSSTISSLVRGILESSSTAGDSGYFNPISLLMIPQNNYEFTEVGKALDHVCTGGIVVPKNLSLSLKLSTRICNAFSRWHTFFKLEYSSGCKSTSSCNP FGEGVGHLPQIMSLKLIQCLEDKRRLRFLIEFHNSRYGDYYHPFTPNTTLVAEGSWDVNKNQLCVVGCRILNSANSFNKSHIEDCSVRLSFRFPAVWSIR NTSGMMGHIWSNKRENDPGYFNTIMFRSHENFVAGIPGSKYQYTVVDKARKSCSEKQPRKNKGKRHPDANSNDMKFNMVVRDSKRRRIGWGYSQPIAVGD QISRRNDFVISSSLRAAYSPVKGKTNHSIPLNISYGMSFQLNESTYVQVFSEGIYDAETGKLCMVGCRYLDSNNRTSDNDSMDCKILINVQFPPVDSNDY IQGTIENTRKKSDPLYFEPLSFSAASFYSQHSRESIWRMDLEIIMSLISNTLVCVFVGYQISYVKKHPAVFPFISLLMLLVLTLGHMIPLMLNFEALFVP KESRTTFLRRSGGWVEANEVIVRVITMVSFLLQFRLLQLVWSARFADGKRKAFLAAEKKTLYLSLPLYISGGLIALYVNWRNNKVGEGMEYAYSSTYQSS LWVDLRSYGGLVLDGFLFPQILLNIFHNSTENALSRFFYIGTTFVRLLPHAYDLYRANYYVEDFDGSYMYADPGGDYYSTAWDVIIPLVGLLFAAIIYLQ QRFGGRCFMPKRFKELEGYEKVPVASDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21700			Protein of unknown function (D...		Potri.003G087400 [exp]	0	1
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Potri.019G055200 [exp]	2.44	0.8892
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.009G119132 [exp]	2.82	0.9101
AT1G25390			Protein kinase superfamily pro...		Potri.010G121400 [exp]	3.74	0.9172
AT3G28890		AtRLP43	receptor like protein 43 (.1.2...		Potri.012G010445 [exp]	8.24	0.9022
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G144700 [exp]	8.66	0.9080
					Potri.012G124788 [exp]	9.89	0.8729
AT5G38210			Protein kinase family protein ...		Potri.004G097100 [exp]	25.13	0.8853
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.005G085200 [exp]	26.40	0.8315	WRKY51.1
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G028500 [exp]	27.49	0.8234
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Potri.012G028101 [exp]	27.92	0.8807

Compare expression of checked genes

Potri.003G087400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.