Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32410 181 / 1e-59 Vacuolar protein sorting 55 (VPS55) family protein AT3G11530 116 / 1e-34 Vacuolar protein sorting 55 (VPS55) family protein (.1), Vacuolar protein sorting 55 (VPS55) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G146600 [exp] 217 / 4e-74 AT1G32410 176 / 6e-58 Vacuolar protein sorting 55 (VPS55) family protein Potri.006G209100 [exp] 117 / 6e-35 AT3G11530 210 / 3e-72 Vacuolar protein sorting 55 (VPS55) family protein (.1), Vacuolar protein sorting 55 (VPS55) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006605 [exp] 204 / 6e-68 AT1G32410 202 / 4e-67 Vacuolar protein sorting 55 (VPS55) family protein Lus10004221 [exp] 102 / 7e-27 AT5G27720 182 / 2e-57 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Lus10029426 [exp] 102 / 6e-26 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04133 [poplar] [flax] Vps55 Vacuolar protein sorting 55
Representative CDS sequence Show only first row Show all	>Potri.003G087500.1 pacid=42784625 polypeptide=Potri.003G087500.1.p locus=Potri.003G087500 ID=Potri.003G087500.1.v4.1 annot-version=v4.1 ATGGCGGACTTACCGGGCTATATGCGTGCCTGTTTGCATACTGGCAAGCTTGCTTTCCTGGCCATTTTGGTTTCTGGAGGAATTGTGTTGCAAATTTTGG CATGTGCCTTGTACAATAATTGGTGGCCGATGCTAACCGTAATAATGTATGTGCCTCTTCCAATGCCCTTGCTGTTCTTTGTGGGCTCCGATAGCTCCAC GCTTCTTACAGAATCTGATAGTGGTTGGGTCAACGCAACGAAGTTCCTGACTGGAGCTTCAGTAATTGGAAGCATTGCAATACCAGTTATCTTAAAGCAT GCTGGTGTTATTGGCTGGGGAGCTCTAGCAATGGAGCTTTCATCATTCTTTGTTTTTGTGATTGCCATAATGTGTTACATAGGCACGAGTGATGAAGCTG ATTACAGCATGCTCTAA
AA sequence Show only first row Show all	>Potri.003G087500.1 pacid=42784625 polypeptide=Potri.003G087500.1.p locus=Potri.003G087500 ID=Potri.003G087500.1.v4.1 annot-version=v4.1 MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTVIMYVPLPMPLLFFVGSDSSTLLTESDSGWVNATKFLTGASVIGSIAIPVILKH AGVIGWGALAMELSSFFVFVIAIMCYIGTSDEADYSML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32410			Vacuolar protein sorting 55 (V...		Potri.003G087500 [exp]	0	1
AT3G48330		ATPIMT1, PIMT1	Arabidopsis thaliana protein-l...		Potri.012G090300 [exp]	2.00	0.8348
AT2G40110			Yippee family putative zinc-bi...		Potri.010G190000 [exp]	2.23	0.8478
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Potri.015G064000 [exp]	2.64	0.8061
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Potri.017G081400 [exp]	4.69	0.7952
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Potri.012G104500 [exp]	6.32	0.7751	LJLCB2.2
AT1G36980			unknown protein		Potri.005G171901 [exp]	7.21	0.7911
AT2G28370			Uncharacterised protein family...		Potri.009G014600 [exp]	7.34	0.8330
AT3G24010		ATING1	ARABIDOPSIS THALIANA INHIBITOR...		Potri.003G174000 [exp]	7.93	0.8004
AT5G11440		CID5, IPD1	INCREASED POLYPLOIDY LEVEL IN ...		Potri.006G246600 [exp]	13.78	0.8004
AT5G55290			ATPase, V0 complex, subunit E ...		Potri.001G359600 [exp]	15.19	0.7713

Compare expression of checked genes

Potri.003G087500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.