Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18030 990 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G26850 929 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G10440 728 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 714 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 688 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 680 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 550 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 491 / 1e-167 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G19120 473 / 1e-160 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G00740 459 / 5e-155 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G146400 [exp] 1161 / 0 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G094100 [exp] 940 / 0 AT1G26850 1031 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.008G147800 [exp] 937 / 0 AT1G26850 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.012G069000 [exp] 894 / 0 AT1G26850 980 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.015G139000 [exp] 722 / 0 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 720 / 0 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 720 / 0 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 719 / 0 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 696 / 0 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003014 [exp] 994 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10011045 [exp] 992 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030479 [exp] 924 / 0 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10037180 [exp] 920 / 0 AT1G26850 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10012830 [exp] 920 / 0 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10036747 [exp] 918 / 0 AT1G26850 1042 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10039385 [exp] 892 / 0 AT1G26850 936 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10008298 [exp] 724 / 0 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10017357 [exp] 717 / 0 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010152 [exp] 716 / 0 AT1G33170 952 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.003G087600.3 pacid=42784632 polypeptide=Potri.003G087600.3.p locus=Potri.003G087600 ID=Potri.003G087600.3.v4.1 annot-version=v4.1 ATGGGTAACAAGCACAACTCTGCAGGGTTCAAAACACGAAGTCCATTGTCTATATTCATTGTTATCTGTTTGTGCTGTTTCTTTTACATCCTGGGTGCAT GGCAGAAGAGTGGTTTTGGAAAAGGAGATGGCATAGCTGTACAGATGTCGAAGCAGACGGATTGTCAAATCTTCCCTGATCTGAACTTTGAAACCCATCA TAATGATGTTGAGATTATTGAGCCTTCTAAGCCAAAAGCCAAAGTGTTTAAACCATGTGATGTCAAGTATACTGATTATACTCCTTGCCAAGAACAAGAT CGAGCCATGACATTTCCACGGGAGAATATGATATACCGGGAAAGGCATTGTCCTCGTGAAGAAGAAAAACTGCATTGTCTTATTCCAGCACCCAAAGGGT ACACGACTCCATTTCCTTGGCCAAAAGGCCGTGATTATGTCCATTATGCTAATGTTCCGCATAAAAGCCTGACTGTGGAGAAGGCTGTTCAGAACTGGGT TCAATTTCAGGGTGATGTATTCAAATTTCCTGGAGGAGGGACCATGTTCCCTCAAGGTGCAGATGCATACATTGATGAACTTGCATCGGTGATCCCTATA GCAGATGGCTCTGTCAGAACCGCACTAGATACTGGTTGTGGGGTAGCCAGCTGGGGAGCATACCTGATGAAAAGAAATGTGTTGGCTATGTCATTTGCAC CACGAGACAATCATGAAGCGCAGGTACAATTTGCATTGGAGCGGGGAGTACCTGCTGTTATTGGGGTTCTAGGTTCAATACATCTTCCATACCCATCGAG AGCCTTTGATATGGCCCAGTGCTCTCGATGTCTAATTCCATGGGCCGCAAATGATGGAATGTACTTGATGGAAGTTGACCGCGTCCTCAGACCTGGTGGA TACTGGATCCTTTCTGGCCCGCCAATCAATTGGAAGACCTACTACCAAACATGGAAACGGTCTAAGGCTGATCTCCAAGCTGAGCAAAGAAGGATTGAAG AGCTGGCTGAAAGTCTTTGCTGGGAGAAGAAGTATGAGAAGGGAGATATTGCTATCTTTAGGAAAAAAGCAAATAACAAAAACTGCCGCAGGAAGTCTGC TAATATTTGTGAATCAAAAGATGCTGATGATGTCTGGTACAAGGAAATGGAAGCATGCAAAACCCCTCTCCCTGAAGTAAACAGTGCAAATGAAGTAGCA GGAGGGGAGTTAAAGAAGTTTCCAGAGAGGCTTTTTGCAATTCCTCCTCGAGTAGCCAAGGGACTTGTCAAGGGTGTCACAGCTGAATCCTTCCAGGAGG ACAATAAACTTTGGAAAAAGCATATAAATGCTTATAAAAGGAACAATAAGTTGATTGGCACTACAAGATACAGGAACATCATGGATATGAATGCAGGGCT TGGAGGATTTGCAGCAGCACTTGAATCCCCAAAATCATGGGTGATGAATGTAGTTCCAACCATTGCTAAGAATACTTTAGGCGTTATCTACGAGAGAGGT TTAGTTGGTATTTATCATGACTGGTGTGAAGGGTTCTCAACATACCCAAGGACGTATGATTTTATCCATGCCAATGGTGTATTTAGTTTGTACCAGAACA AGTGTAACCTGGAAGACATCCTTCTGGAAATGGACCGCATTTTGCGTCCTGAAGGGACCGTAATCTTCCGAGATGAGGTTGATGTTCTGAACAAGGTTAA GAAAATTGCTGGAGGAATGAGATGGGATACAAAAATGATGGATCATGAGGATGGTCCCCTTGTACCTGAGAAGATACTGGTGGTGGTTAAACAGTACTGG GTTGGTGGCACAGGAAACAGCACATCAAGTGATCAATAA
AA sequence Show only first row Show all	>Potri.003G087600.3 pacid=42784632 polypeptide=Potri.003G087600.3.p locus=Potri.003G087600 ID=Potri.003G087600.3.v4.1 annot-version=v4.1 MGNKHNSAGFKTRSPLSIFIVICLCCFFYILGAWQKSGFGKGDGIAVQMSKQTDCQIFPDLNFETHHNDVEIIEPSKPKAKVFKPCDVKYTDYTPCQEQD RAMTFPRENMIYRERHCPREEEKLHCLIPAPKGYTTPFPWPKGRDYVHYANVPHKSLTVEKAVQNWVQFQGDVFKFPGGGTMFPQGADAYIDELASVIPI ADGSVRTALDTGCGVASWGAYLMKRNVLAMSFAPRDNHEAQVQFALERGVPAVIGVLGSIHLPYPSRAFDMAQCSRCLIPWAANDGMYLMEVDRVLRPGG YWILSGPPINWKTYYQTWKRSKADLQAEQRRIEELAESLCWEKKYEKGDIAIFRKKANNKNCRRKSANICESKDADDVWYKEMEACKTPLPEVNSANEVA GGELKKFPERLFAIPPRVAKGLVKGVTAESFQEDNKLWKKHINAYKRNNKLIGTTRYRNIMDMNAGLGGFAAALESPKSWVMNVVPTIAKNTLGVIYERG LVGIYHDWCEGFSTYPRTYDFIHANGVFSLYQNKCNLEDILLEMDRILRPEGTVIFRDEVDVLNKVKKIAGGMRWDTKMMDHEDGPLVPEKILVVVKQYW VGGTGNSTSSDQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18030			S-adenosyl-L-methionine-depend...		Potri.003G087600 [exp]	0	1
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Potri.011G050800 [exp]	3.46	0.8430
AT4G23820			Pectin lyase-like superfamily ...		Potri.003G139100 [exp]	4.12	0.8495
AT4G18570			Tetratricopeptide repeat (TPR)...		Potri.004G054900 [exp]	6.32	0.7952
AT3G08030			Protein of unknown function, D...		Potri.001G263900 [exp]	6.92	0.8354
AT3G48550			unknown protein		Potri.012G097901 [exp]	10.24	0.8196
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G070000 [exp]	14.79	0.7211
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Potri.006G247200 [exp]	15.42	0.7955
AT5G12890			UDP-Glycosyltransferase superf...		Potri.017G077700 [exp]	15.49	0.7740
AT1G67750			Pectate lyase family protein (...		Potri.008G182200 [exp]	16.61	0.7659
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.006G116900 [exp]	17.43	0.8216

Compare expression of checked genes

Potri.003G087600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.