Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtpRR10
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18020 389 / 8e-130 GARP APRR2 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) AT5G44190 122 / 2e-30 GARP ATGLK2, GPRI2, GLK2 GBF'S PRO-RICH REGION-INTERACTING FACTOR 2, GOLDEN2-like 2 (.1) AT2G20570 105 / 2e-24 GARP ATGLK1, GLK1, GPRI1 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) AT5G58080 84 / 8e-17 GARP ARR18 response regulator 18 (.1) AT5G59570 79 / 7e-16 GARP BOA BROTHER OF LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1) AT2G01760 79 / 2e-15 GARP ARR14 response regulator 14 (.1) AT3G46640 77 / 2e-15 GARP PCL1, LUX PHYTOCLOCK 1, LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1.2.3) AT2G25180 78 / 5e-15 GARP ARR12 response regulator 12 (.1) AT5G05090 76 / 6e-15 GARP Homeodomain-like superfamily protein (.1) AT2G40970 75 / 8e-15 GARP MYBC1 Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G146200 [exp] 834 / 0 AT4G18020 447 / 2e-152 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Potri.007G136901 [exp] 146 / 2e-38 AT2G20570 256 / 5e-81 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Potri.017G015800 [exp] 115 / 8e-28 AT2G20570 259 / 2e-82 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Potri.006G262100 [exp] 82 / 3e-16 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.009G035000 [exp] 80 / 6e-16 AT3G46640 250 / 3e-81 PHYTOCLOCK 1, LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1.2.3) Potri.018G021300 [exp] 80 / 2e-15 AT2G25180 364 / 2e-117 response regulator 12 (.1) Potri.008G135500 [exp] 80 / 2e-15 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.018G111300 [exp] 79 / 3e-15 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.010G105600 [exp] 78 / 6e-15 AT4G16110 376 / 2e-121 response regulator 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040109 [exp] 611 / 0 AT4G18020 371 / 8e-123 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10030938 [exp] 589 / 0 AT4G18020 377 / 2e-124 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10003013 [exp] 560 / 0 AT4G18020 376 / 6e-125 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10011044 [exp] 527 / 0 AT4G18020 366 / 3e-121 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10039883 [exp] 112 / 3e-26 AT2G20570 241 / 7e-75 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10018649 [exp] 111 / 5e-26 AT2G20570 222 / 6e-68 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10033642 [exp] 109 / 1e-25 AT2G20570 224 / 6e-69 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10036303 [exp] 88 / 5e-18 AT2G25180 294 / 4e-92 response regulator 12 (.1) Lus10019058 [exp] 83 / 2e-16 AT2G25180 290 / 1e-90 response regulator 12 (.1) Lus10040780 [exp] 79 / 2e-16 AT3G46640 182 / 9e-57 PHYTOCLOCK 1, LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Potri.003G087700.21 pacid=42785454 polypeptide=Potri.003G087700.21.p locus=Potri.003G087700 ID=Potri.003G087700.21.v4.1 annot-version=v4.1 ATGGTTTGTACCACTAATGATTTATCAGCATGGAAGGATTTTCCAAAGGGCCTCAGTGTCCTTCTCCTTGATGAGGACAACAGTTCTGCTGCTGAGATAA AATCGAAACTGGAAGCACTGGACTATATCGTTTATACATTCTGCAATGAGAATGAAGCGCTCTTAGCAATTTCAAATGAACCTGGAAGCTTCCATGTTGC TATAGTGGAGGTGAGTACGAGCAATAGCAATGGGAGTTTCAAGTTTCTAGAAACTGCAAAGGACTTGCCTACCATTATGACTTCAAACATTCATTGCCTG AACACCATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTTCGGAAACCACTCTCTGAAGATAAACTAAGGAATATATGGCAGCATGTGGTTCATA AGGCATTTAATGCAGGTGGGAGTGTTCAATCCGAATCACTAAAGCCTGTCAAAGATTCTATAGTTTCTATGCTTGAGCTCAAAGTGGAACTTGAAGAAAA CGAGGATGAGAACATGGAGAAAACAGAAAATGCGTCTTTGGCTCAGGAAAGCAATGAGCAGCAGTCACCAGCTAGTGATAAGCATCCAGCTCCTTCAACT TGGCAATTTAAACAAGTAGGGCGGCTGCTGGATGATGGAGATTGCCAAGACCATATTAACTGCTCAGTAGAAAAGGATAGTGGGGAGCAAGAGGGGGAAT CTAAATCTGTCGAAACAACTTGTGCCATGTCTCAAGAAACTCTAAAAGCAGGGCATCCTCCATGCTTTATAGAGACTGTGATCAAAGAGACAGGTGACTT AACTGATGGTGCCAAGAGTGAGAATAACATACATCCCAATCCACAAAATAAAGACAGTCTCAACCATTCTAATGATGTTGCTTCTGATCTTCATACTTCC AATGGGACTAGAGCTAATCGAAAGAAGATGAAGGTAGACTGGACACCAGAGCTTCACAAAAAATTTGTGCAAGTGGTGGAAAAACTAGGTGTAGATCAAG CAATTCCTTCACGAGTATTAGAGCTAATGAAAGTGGAAAGCTTGACTAGGCATAATGTAGCAAGTCATCTGCAGAAATATCGAATGCGCAGGAGGCCTAT TTTGCCCAAGGAAGATGACCGGCGATGGCCACACCATAGAGAGCAAGTACAAAGGAGCTATTATCCATATAAACCTATCATGGCATACCCTCCATATCAT TCTAACCATGATCTTCCAACCAACCCGGTCTATCCTATGTGGGGAGCAACAGGTAGTCACACAGCTAGCATGCATACGTGGGGCACACCCAGCTATCTCC CATGGCCCCCAACAGAAATTTGGCACAGGAAGCCTTATCTAGGGATGCATGCGGATGCATGGGGTTGCCCTGTGATGCCACCATTGCATAGTCCTTTTTC TTCTTTTCCTCAAAATGCATCTGGGTTTCAAAGTGCCAGCATGGTCGATAACAGCTGTGGCATGCCACAAAAACCTTTTGACCTACAACCGGCCGAGGAG GTGATCAACAAGGTAGTGAAAGAGGTAATCAACAAACCTTGGCTACCGTTGCCCATAGGCCTCAAGCCCCCTTCTACAGATAGCGTCCTAGCGGAGCTCT CCAGGCAAGGCATCTCATCAATTCCTCCCCTTTGCTCTAATTCCTTCTAA
AA sequence Show only first row Show all	>Potri.003G087700.21 pacid=42785454 polypeptide=Potri.003G087700.21.p locus=Potri.003G087700 ID=Potri.003G087700.21.v4.1 annot-version=v4.1 MVCTTNDLSAWKDFPKGLSVLLLDEDNSSAAEIKSKLEALDYIVYTFCNENEALLAISNEPGSFHVAIVEVSTSNSNGSFKFLETAKDLPTIMTSNIHCL NTMMKCIALGAVEFLRKPLSEDKLRNIWQHVVHKAFNAGGSVQSESLKPVKDSIVSMLELKVELEENEDENMEKTENASLAQESNEQQSPASDKHPAPST WQFKQVGRLLDDGDCQDHINCSVEKDSGEQEGESKSVETTCAMSQETLKAGHPPCFIETVIKETGDLTDGAKSENNIHPNPQNKDSLNHSNDVASDLHTS NGTRANRKKMKVDWTPELHKKFVQVVEKLGVDQAIPSRVLELMKVESLTRHNVASHLQKYRMRRRPILPKEDDRRWPHHREQVQRSYYPYKPIMAYPPYH SNHDLPTNPVYPMWGATGSHTASMHTWGTPSYLPWPPTEIWHRKPYLGMHADAWGCPVMPPLHSPFSSFPQNASGFQSASMVDNSCGMPQKPFDLQPAEE VINKVVKEVINKPWLPLPIGLKPPSTDSVLAELSRQGISSIPPLCSNSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Potri.003G087700 [exp]	0	1	PtpRR10
AT4G23170		CRK9, EP1	CYSTEINE-RICH RLK \(RECEPTOR-L...		Potri.007G120800 [exp]	1.41	0.8914
AT3G48660			Protein of unknown function (D...		Potri.015G098300 [exp]	1.41	0.8819
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.006G033500 [exp]	2.82	0.8646
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Potri.002G149600 [exp]	3.16	0.8500
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Potri.001G049100 [exp]	3.46	0.8749
					Potri.007G020732 [exp]	6.00	0.8720
AT1G22730			MA3 domain-containing protein ...		Potri.005G199200 [exp]	6.70	0.8634
AT5G43020			Leucine-rich repeat protein ki...		Potri.014G024400 [exp]	11.95	0.8435
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Potri.004G015600 [exp]	13.00	0.8276	Pt-LCOSC2.7
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Potri.011G135900 [exp]	13.03	0.7484	GPT.1

Compare expression of checked genes

Potri.003G087700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.