Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33340 430 / 8e-149 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G64830 417 / 5e-144 Eukaryotic aspartyl protease family protein (.1) AT2G35615 365 / 2e-123 Eukaryotic aspartyl protease family protein (.1) AT1G31450 350 / 3e-117 Eukaryotic aspartyl protease family protein (.1) AT2G28010 262 / 1e-83 Eukaryotic aspartyl protease family protein (.1) AT2G28040 259 / 1e-82 Eukaryotic aspartyl protease family protein (.1) AT2G28030 256 / 2e-81 Eukaryotic aspartyl protease family protein (.1) AT2G28220 251 / 1e-75 Eukaryotic aspartyl protease family protein (.1) AT2G03200 204 / 1e-60 Eukaryotic aspartyl protease family protein (.1) AT1G01300 169 / 3e-47 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114400 [exp] 570 / 0 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 379 / 1e-128 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 215 / 4e-65 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 212 / 9e-64 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 179 / 4e-51 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 175 / 2e-49 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 172 / 4e-48 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 170 / 2e-47 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G179500 [exp] 162 / 9e-45 AT2G23945 412 / 3e-141 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024910 [exp] 413 / 1e-141 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 409 / 5e-140 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 403 / 4e-138 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 402 / 2e-137 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10040325 [exp] 400 / 1e-136 AT5G33340 451 / 5e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 399 / 2e-136 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10018825 [exp] 374 / 2e-126 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002611 [exp] 369 / 1e-124 AT5G33340 392 / 9e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10020279 [exp] 368 / 2e-124 AT5G33340 393 / 3e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002612 [exp] 362 / 7e-122 AT5G33340 393 / 5e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14541 [poplar] [flax] TAXi_C Xylanase inhibitor C-terminal
Representative CDS sequence Show only first row Show all	>Potri.003G087900.1 pacid=42787341 polypeptide=Potri.003G087900.1.p locus=Potri.003G087900 ID=Potri.003G087900.1.v4.1 annot-version=v4.1 ATGGCAACTTTTCAATCTGTTCTCTCTTTTGCTTCAGCAATTGCACTCTGTGTTGCTAGTTTTGGCTGCATATATGCCCACAATGCTGGATTTACTACGG AACTAGTCCACCGTGATTCACCAAAGTCCCCCCTTTACAACTCTCAACAAACTCACCTCCAACGTTGGAACAAAGCTATGCGCCGATCCGTTAGTCGAGT CCACCATTTTCAGAGAACTGCTGCTACAGTCTCTCCAAAAGAAGTTGAATCTGAGATTATAGCTAATGGAGGTGAATATCTCATGAGTTTATCCCTCGGG ACACCGCCTTTTGAGATCCTGGCTATAGCAGATACGGGCAGTGATCTTATATGGACACAGTGCACGCCATGCGACAAGTGTTACAAGCAAATTGCTCCTC TTTTTGACCCAAAATCCTCTAAGACATATAGAGACCTCTCTTGTGACACAAGGCAATGCCAAAACCTAGGCGAGAGTAGTTCCTGCTCCTCCGAACAGCT TTGCCAATACTCGTATTATTATGGTGATCGATCCTTTACCAATGGAAATCTTGCCGTTGATACAGTCACTTTGCCTTCCACAAATGGCGGTCCAGTGTAT TTCCCTAAAACTGTCATTGGCTGTGGGCGTCGAAATAATGGAACCTTTGATAAGAAAGATTCAGGTATTATTGGCCTTGGAGGTGGTCCAATGTCCCTTA TATCTCAAATGGGCTCCTCTGTTGGTGGCAAATTCTCGTACTGTCTGGTGCCATTTTCCTCCGAATCTGCAGGAAACTCGAGCAAATTACATTTTGGAAG AAATGCTGTGGTTTCCGGTTCTGGAGTCCAATCAACCCCATTAATCTCAAAAAATCCAGATACCTTTTACTATTTAACACTAGAAGCCATGAGTGTTGGA GACAAGAAAATAGAATTCGGAGGTTCTTCCTTCGGAGGCAGTGAGGGCAACATCATCATTGATTCAGGTACTTCCTTGACATTATTTCCAGTAAATTTCT TCACGGAATTTGCTACAGCGGTTGAAAATGCAGTTATTAATGGAGAACGCACCCAAGACGCAAGTGGATTACTGAGTCATTGTTATCGCCCTACTCCTGA TCTAAAGGTTCCTGTAATCACTGCACATTTCAATGGTGCAGATGTGGTGCTCCAGACTTTAAATACCTTTATATTAATTTCAGATGATGTCTTGTGCTTA GCTTTCAACTCAACTCAATCTGGTGCAATCTTTGGAAACGTTGCACAAATGAACTTCTTGATAGGCTATGACATTCAAGGAAAGTCTGTGTCTTTTAAGC CGACTGATTGCACCCAATTGTAA
AA sequence Show only first row Show all	>Potri.003G087900.1 pacid=42787341 polypeptide=Potri.003G087900.1.p locus=Potri.003G087900 ID=Potri.003G087900.1.v4.1 annot-version=v4.1 MATFQSVLSFASAIALCVASFGCIYAHNAGFTTELVHRDSPKSPLYNSQQTHLQRWNKAMRRSVSRVHHFQRTAATVSPKEVESEIIANGGEYLMSLSLG TPPFEILAIADTGSDLIWTQCTPCDKCYKQIAPLFDPKSSKTYRDLSCDTRQCQNLGESSSCSSEQLCQYSYYYGDRSFTNGNLAVDTVTLPSTNGGPVY FPKTVIGCGRRNNGTFDKKDSGIIGLGGGPMSLISQMGSSVGGKFSYCLVPFSSESAGNSSKLHFGRNAVVSGSGVQSTPLISKNPDTFYYLTLEAMSVG DKKIEFGGSSFGGSEGNIIIDSGTSLTLFPVNFFTEFATAVENAVINGERTQDASGLLSHCYRPTPDLKVPVITAHFNGADVVLQTLNTFILISDDVLCL AFNSTQSGAIFGNVAQMNFLIGYDIQGKSVSFKPTDCTQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Potri.003G087900 [exp]	0	1
AT3G11310			unknown protein		Potri.001G182200 [exp]	3.16	0.9599
AT5G05800			unknown protein		Potri.001G195601 [exp]	4.89	0.9385
					Potri.002G214475 [exp]	5.00	0.9396
AT1G15780			unknown protein		Potri.003G026510 [exp]	13.26	0.8875
AT5G05800			unknown protein		Potri.017G072700 [exp]	16.73	0.9192
					Potri.017G046700 [exp]	16.73	0.8743
AT1G47580			Pentatricopeptide repeat (PPR)...		Potri.002G130900 [exp]	21.63	0.8603
					Potri.007G067650 [exp]	24.24	0.8563
					Potri.008G213423 [exp]	26.72	0.8608
AT5G05800			unknown protein		Potri.005G153700 [exp]	31.62	0.8492

Compare expression of checked genes

Potri.003G087900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.