Plant FIBer expression Database

Potri.003G088201 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G031650
[exp]
59 / 4e-12 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G088201.1 pacid=42785997 polypeptide=Potri.003G088201.1.p locus=Potri.003G088201 ID=Potri.003G088201.1.v4.1 annot-version=v4.1
ATGATGTCGAGGAAAACATGGAGTGATGTTGGCTTGGATAATACGGTCCAGATTGACTGTGATTCTCTGGCAGGTTGGATTATACAGCTAGGAGGAAATG
AGGAAGGTTTGCTTTTCATGTCCACGATATGGTGGATTTGGCGCCAACGCAATATCCTAGCATTTGGTGAGACTTATAAAGGGGACCAGTGGTTGCTTTC
CAATATCTATCGTATGGTGGAAGACATGAGACAGGCATGGCATGGGGCTGATGTTTCGTATATTACTTCCAGGATGGTTTCTTGGAGCAGGCTGGAGGAG
GATACTGATAAACTTGATGTTCATGCTACTTCTCTGGGTAATCCAGGTAGAGTGGGGATATCGGGGGCCTAA
AA sequence
>Potri.003G088201.1 pacid=42785997 polypeptide=Potri.003G088201.1.p locus=Potri.003G088201 ID=Potri.003G088201.1.v4.1 annot-version=v4.1
MMSRKTWSDVGLDNTVQIDCDSLAGWIIQLGGNEEGLLFMSTIWWIWRQRNILAFGETYKGDQWLLSNIYRMVEDMRQAWHGADVSYITSRMVSWSRLEE
DTDKLDVHATSLGNPGRVGISGA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G088201
[exp]
0 1
AT1G30260 AGL79 unknown protein Potri.004G133180
[exp]
2.44 0.9408
AT3G62550 Adenine nucleotide alpha hydro... Potri.014G122000
[exp]
9.16 0.9311
AT5G63520 unknown protein Potri.011G010100
[exp]
12.00 0.8956
AT3G26430 GDSL-like Lipase/Acylhydrolase... Potri.005G177900
[exp]
13.11 0.9241
AT4G32300 SD2-5 S-domain-2 5 (.1) Potri.004G014301
[exp]
16.58 0.9240
AT5G65890 ACR1 ACT domain repeat 1 (.1.2) Potri.014G006700
[exp]
17.97 0.8815
AT1G52340 SIS4, SDR1, ISI... SHORT-CHAIN DEHYDROGENASE REDU... Potri.016G073700
[exp]
24.14 0.8921
AT1G76430 PHT1;9 phosphate transporter 1;9 (.1) Potri.002G005500
[exp]
28.24 0.9026 PtrPHT1-9
AT1G02260 Divalent ion symporter (.1) Potri.017G141650
[exp]
33.88 0.8766
AT1G07050 CCT motif family protein (.1) Potri.001G281700
[exp]
36.53 0.8864

Potri.003G088201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.