Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18010 615 / 0 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT1G34120 311 / 5e-98 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT3G63240 293 / 4e-91 DNAse I-like superfamily protein (.1) AT2G32010 283 / 7e-87 CVL1 CVP2 like 1 (.1.2) AT1G71710 282 / 6e-86 DNAse I-like superfamily protein (.1.2) AT1G05470 280 / 1e-85 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT2G37440 272 / 4e-85 DNAse I-like superfamily protein (.1.2) AT5G04980 265 / 6e-82 DNAse I-like superfamily protein (.1.2) AT5G65090 264 / 3e-81 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT2G01900 235 / 6e-71 DNAse I-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G145900 [exp] 1032 / 0 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.005G197800 [exp] 451 / 6e-151 AT1G71710 658 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.002G063500 [exp] 430 / 1e-142 AT1G71710 631 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.005G212700 [exp] 296 / 3e-92 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.008G155700 [exp] 292 / 1e-90 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.002G050000 [exp] 291 / 1e-90 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.010G084300 [exp] 289 / 2e-89 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.008G011000 [exp] 279 / 6e-87 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.010G247800 [exp] 278 / 5e-86 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003010 [exp] 704 / 0 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10011041 [exp] 703 / 0 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10028727 [exp] 442 / 2e-147 AT1G71710 674 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10028697 [exp] 434 / 4e-144 AT1G71710 675 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10040107 [exp] 436 / 4e-142 AT4G18010 638 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10006597 [exp] 290 / 3e-92 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10039352 [exp] 290 / 2e-89 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10006904 [exp] 278 / 3e-85 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1) Lus10025305 [exp] 274 / 3e-84 AT2G37440 481 / 8e-167 DNAse I-like superfamily protein (.1.2) Lus10008934 [exp] 261 / 5e-83 AT5G04980 395 / 3e-138 DNAse I-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.003G088300.18 pacid=42786092 polypeptide=Potri.003G088300.18.p locus=Potri.003G088300 ID=Potri.003G088300.18.v4.1 annot-version=v4.1 ATGAGGACCAGGAGAGGAAAGCGTGCTGAGGCTTTCTGGCCTTCACTTGTGGTGAAGAAATGGTTGAACATAAAGCACAAGGTTAATGATTTTAGTGAAG ATGAATACACAGAAACTGAGAGTGAAGATGATGCTCCCTCTGTTAAAGATGACAGAGTTAATGTGGATGAGGATCGAGCACATAGGATTCAGGGGAACCA ATCTGTGTTTCGGAGTCAAATTTCAGATGCACCTTCTAAGGGCTATTCATCAGGACATAGGAGAGGGAAATCTGAAACTCTGCGTGCTCAATACATAAAT ACAAAGGATGTGAGGGTGACAATAGGTACTTGGAATGTCGCTGGAAGGCTTCCGAACGAGGATCTTGATATTGATTGTTGGCTTTGTCCAGAAGAACCAG CAGATATTTACATCATCGGTTTCCAAGAGGTGGTCCCTTTGAATGCTGGGAATGTACTGGGAGCAGAGAGTAGCAGACCAATTCCAAAATGGGAGGCAAT CATTAGAAGGACTCTGAACAAATCTCACCAAGCTGAAAGCAAACACAAATGTTTTAGTGCCCCACCCTCACCAGTATTAAGAACTTCTTCAGTTGCCGAT GAACTTGCCGACGAGGTTGATTCTCTACCATTAGAGGTGATGAATGAGGAATATATTGAAGCTGCTGATGGTTGTGAATCTGACATACTTGAATTTGGCA AAGCTATTGGTATTGGAAAGAATTTACACTTGAAGAGAGTATATGGCATTGATTGTGATAGTAAGTTAGACTGGCCTGAACATTCATTGGCTGCGACCCC ACAAGTTATCTCTTCCAATTCCAAGCTACGGAGAGTGTCTAGCAGTTCTGCAAGAATAGGTTTCAATTGGTCAGAGAATCCCTCATTATTTAGTCCTCAG CATATTGCATTGAACAGGAGTGGACTAAAAAGATCTCACCAGAGTTCTGGAAATTTAGGCTCAATGTGGTTGGAGCGGGAGCAGAGGCGTGAGGTTCCTG AAGTCCCAGAAGTTCCTGAGGTTATTGATTCATTCTCCGAGGTCTCTGATTGGTTATCTGAAGCAGAGGATGACACTTTCTTAGAAGTACCAAGCGAACA ATATTACAGTGAAATCATCAAAGATAATGATGATCCACGCCCAAAGTATGTGCGAATTGTTAGCAAGCAAATGGTAGGAATATATGTATCAATTTGGGTG CGTAAGAGATTGAGGAGGCATATAAACAACTTGGAGGTCTCTCCTGTTGGGGTAGGTCTTATGGGCTATATGGGAAACAAGGGATCTGTTTCTGTTAGCA TGTCTGTTTTCCAGTCAAGGCTTTGCTTTGTTTGTTCCCATCTGACCTCAGGTCAGAAAGATGGGGCTGAACAAAGGCGTAATGCTGATGTCTGTGAAAT TATTCGACGCACCCGTTTCTCATCTATCTTGGACACCAATCAAGCACAGACAATTCCATCCCATGATCAGATATTCTGGTTTGGAGATTTGAATTATCGT CTCAATATGTTGGACACAGAAGTAAGGAAACTTGTTGCTATGAAGCAATGGGATGAACTTATCAATAGTGATCAGCTAAGCAAAGAACTCTGCGGTGGGC GTGTATTTGAAGGATGGAAAGAGGGAGCGATAAACTTTCCGCCAACTTACAAATATGAAATAAACTCTGATACATATGTTGGGGAGAACCCCAAAGAAGG GGAGAAGAAGAGATCTCCGGCATGGTGTGATCGAATACTTTGGTTAGGAAAAGGTATAAAACAACTTTCTTACAAGCGGTCAGAATTAAGGCTCTCAGAT CATCGACCAGTCAGTTCAATGTTCTTAGTTGAAGTTGAAGTCTTGGATCATCGGAAGCTGAAGAAAGCTCTCAATGTCAATAGTGCGGCAGTGCATCCTG AGATTTTCCTCGACTGA
AA sequence Show only first row Show all	>Potri.003G088300.18 pacid=42786092 polypeptide=Potri.003G088300.18.p locus=Potri.003G088300 ID=Potri.003G088300.18.v4.1 annot-version=v4.1 MRTRRGKRAEAFWPSLVVKKWLNIKHKVNDFSEDEYTETESEDDAPSVKDDRVNVDEDRAHRIQGNQSVFRSQISDAPSKGYSSGHRRGKSETLRAQYIN TKDVRVTIGTWNVAGRLPNEDLDIDCWLCPEEPADIYIIGFQEVVPLNAGNVLGAESSRPIPKWEAIIRRTLNKSHQAESKHKCFSAPPSPVLRTSSVAD ELADEVDSLPLEVMNEEYIEAADGCESDILEFGKAIGIGKNLHLKRVYGIDCDSKLDWPEHSLAATPQVISSNSKLRRVSSSSARIGFNWSENPSLFSPQ HIALNRSGLKRSHQSSGNLGSMWLEREQRREVPEVPEVPEVIDSFSEVSDWLSEAEDDTFLEVPSEQYYSEIIKDNDDPRPKYVRIVSKQMVGIYVSIWV RKRLRRHINNLEVSPVGVGLMGYMGNKGSVSVSMSVFQSRLCFVCSHLTSGQKDGAEQRRNADVCEIIRRTRFSSILDTNQAQTIPSHDQIFWFGDLNYR LNMLDTEVRKLVAMKQWDELINSDQLSKELCGGRVFEGWKEGAINFPPTYKYEINSDTYVGENPKEGEKKRSPAWCDRILWLGKGIKQLSYKRSELRLSD HRPVSSMFLVEVEVLDHRKLKKALNVNSAAVHPEIFLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18010		AT5PTASE2, IP5P...	INOSITOL\(1,4,5\)P3 5-PHOSPHAT...		Potri.003G088300 [exp]	0	1
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Potri.001G100800 [exp]	1.41	0.9742
AT4G24000		ATCSLG2	ARABIDOPSIS THALIANA CELLULOSE...		Potri.010G074800 [exp]	2.44	0.9643
					Potri.001G093100 [exp]	2.82	0.9570
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Potri.003G131300 [exp]	3.16	0.9699
AT2G16890			UDP-Glycosyltransferase superf...		Potri.001G348100 [exp]	3.87	0.9617
AT5G38260			Protein kinase superfamily pro...		Potri.015G044875 [exp]	5.29	0.9570
AT1G07650			Leucine-rich repeat transmembr...		Potri.004G063900 [exp]	6.32	0.9625
AT5G38260			Protein kinase superfamily pro...		Potri.015G045200 [exp]	7.34	0.9573
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043500 [exp]	7.34	0.9565
AT5G45800		MEE62	maternal effect embryo arrest ...		Potri.004G058500 [exp]	8.30	0.9371

Compare expression of checked genes

Potri.003G088300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.