Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35390 655 / 0 Phosphoribosyltransferase family protein (.1.2.3) AT1G32380 640 / 0 PRS2 phosphoribosyl pyrophosphate (PRPP) synthase 2 (.1) AT2G44530 611 / 0 Phosphoribosyltransferase family protein (.1.2) AT1G10700 87 / 1e-18 PRS3 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) AT2G42910 74 / 2e-14 Phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G145700 [exp] 744 / 0 AT2G35390 657 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Potri.014G179600 [exp] 637 / 0 AT2G44530 628 / 0.0 Phosphoribosyltransferase family protein (.1.2) Potri.010G045000 [exp] 82 / 1e-16 AT1G10700 566 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Potri.005G202100 [exp] 81 / 1e-16 AT2G42910 565 / 0.0 Phosphoribosyltransferase family protein (.1) Potri.002G059700 [exp] 78 / 9e-16 AT2G42910 575 / 0.0 Phosphoribosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040098 [exp] 647 / 0 AT2G35390 639 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Lus10012074 [exp] 639 / 0 AT2G44530 605 / 0.0 Phosphoribosyltransferase family protein (.1.2) Lus10030948 [exp] 629 / 0 AT2G35390 613 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Lus10027908 [exp] 580 / 0 AT2G44530 555 / 0.0 Phosphoribosyltransferase family protein (.1.2) Lus10020768 [exp] 82 / 4e-17 AT2G42910 582 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10006202 [exp] 83 / 5e-17 AT1G10700 577 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Lus10007345 [exp] 81 / 8e-17 AT2G42910 579 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10036849 [exp] 82 / 1e-16 AT1G10700 577 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Lus10010935 [exp] 80 / 3e-16 AT2G42910 572 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10031395 [exp] 79 / 5e-16 AT2G42910 578 / 0.0 Phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [poplar] [flax] PRTase-like PF00156 [poplar] [flax] Pribosyltran Phosphoribosyl transferase domain CL0533 [poplar] [flax] PRTase-like PF13793 [poplar] [flax] Pribosyltran_N N-terminal domain of ribose phosphate pyrophosphokinase
Representative CDS sequence Show only first row Show all	>Potri.003G088400.2 pacid=42786103 polypeptide=Potri.003G088400.2.p locus=Potri.003G088400 ID=Potri.003G088400.2.v4.1 annot-version=v4.1 ATGGCTTCTTCATTGGGCATGCAATCGTCTCCTTCACGAACGGCGTCGTTTTTGAAGCCCTCTTCGTCGTTGTCTCGTTGCTGTTCTAGACAGACAAGTT TGAGTTTCAATGGCGCTAGCACCCGAATTTCCTCTACAAACACCATTAAATGCGATATTTCTGAACCATTGAATTTTGGAAACGGGAAGCCTACTATTCC TGTCCTTAACAACCAGACCTTGCCCAAGTTTTTGGAATCTGCCCGAGTGGATAAAACTGTTAACAGAAATGATACCAGGCTGAAATTGTTTTCTGGCACA GCAAATCCTGCTCTATCTCAGGAAGTTGCTCGGTATATGGGCCTAGAACTGGGAAAGATCAACATAAAGCGATTTGCTGATGGTGAAATATACGTTCAGT TGCAAGAGAGTGTTAGAGGATGCGATGTTTTTCTACTGCAGCCCACCTGTCCTCAGGCAAATGAGAATCTCATGGAACTTCTGATCATGATAGATGCTTG TCGGAGAGCATCAGCCAAGAACATCACTGCTGTGATCCCATACTTTGGATATGCCAGAGCTGATCGAAAGACTCAGGGTCGTGAATCCATTGCAGCCAAA CTTGTCGCAAACCTTATCACAGAAGCAGGTGCAACCCGCATTCTTGCCTGTGATCTTCATTCTGGGCAGTCTATGGGTTACTTTGATATTCCCGTGGACC ATGTGTATGGCCAGCCTGTGATTCTTGATTATCTTGCAAGCAAGACAATTTGTTTTAGTGATTTGGTAGTGGTTTCACCTGATGTTGGTGGTGTTGCAAG AGCACGGGCTTTTGCCAAAAAACTGTCAGATGCTCCTTTAGCTATAGTGGATAAAAGGCGTCATGGACACAATGTTGCTGAGGTTATGAATCTTATTGGT GATGTAAAAGGAAAGGTTGCAGTTATGGTGGATGACATGATTGACACTGCTGGTACAATTGCAAAAGGAGCAGCTCTTTTACATGAAGAGGGGGCCAGGG AAGTTTATGCATGCTGTACTCATGCTGTTTTTAGCCCTCCTGCAATTGAGAGGTTGTCCAGTGGCCTATTTCAAGAGGTTATCATTACAAACACAATTCC TGTGGCGGAGAAGAACTACTTTCCTCAGTTGACTGTGCTTTCTGTCGCAAATCTGCTGGGCGAGACAATTTGGCGTGTTCATGATGACTGTTCCGTGAGT AGCATTTTTCAATAA
AA sequence Show only first row Show all	>Potri.003G088400.2 pacid=42786103 polypeptide=Potri.003G088400.2.p locus=Potri.003G088400 ID=Potri.003G088400.2.v4.1 annot-version=v4.1 MASSLGMQSSPSRTASFLKPSSSLSRCCSRQTSLSFNGASTRISSTNTIKCDISEPLNFGNGKPTIPVLNNQTLPKFLESARVDKTVNRNDTRLKLFSGT ANPALSQEVARYMGLELGKINIKRFADGEIYVQLQESVRGCDVFLLQPTCPQANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAK LVANLITEAGATRILACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTICFSDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIG DVKGKVAVMVDDMIDTAGTIAKGAALLHEEGAREVYACCTHAVFSPPAIERLSSGLFQEVIITNTIPVAEKNYFPQLTVLSVANLLGETIWRVHDDCSVS SIFQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35390			Phosphoribosyltransferase fami...		Potri.003G088400 [exp]	0	1
AT3G55410			2-oxoglutarate dehydrogenase, ...		Potri.008G051600 [exp]	1.00	0.9202
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Potri.006G052800 [exp]	2.82	0.8829
AT5G47560		ATTDT, ATSDAT	tonoplast dicarboxylate transp...		Potri.006G013900 [exp]	3.00	0.8593
AT3G22550			Protein of unknown function (D...		Potri.002G050800 [exp]	4.24	0.8420
AT2G44130			Galactose oxidase/kelch repeat...		Potri.003G218400 [exp]	7.48	0.8318
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Potri.002G107200 [exp]	8.12	0.8351	Pt-ZF14.1
AT5G24080			Protein kinase superfamily pro...		Potri.015G026300 [exp]	8.48	0.8461
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Potri.004G163300 [exp]	8.48	0.8001	Pt-SPE1.1
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036466 [exp]	9.16	0.8338
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.001G041800 [exp]	9.48	0.8504

Compare expression of checked genes

Potri.003G088400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.