Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57990 58 / 5e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G145400 [exp] 473 / 7e-167 AT3G57990 80 / 3e-16 unknown protein Potri.006G191800 [exp] 68 / 3e-12 AT3G57990 299 / 1e-99 unknown protein Potri.016G046900 [exp] 64 / 2e-11 AT3G57990 345 / 3e-118 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021042 [exp] 61 / 7e-10 AT3G57990 341 / 6e-116 unknown protein Lus10004184 [exp] 52 / 5e-07 AT3G57990 329 / 3e-111 unknown protein Lus10012013 [exp] 50 / 1e-06 AT3G57990 296 / 3e-98 unknown protein Lus10016270 [exp] 49 / 3e-06 AT3G57990 300 / 4e-100 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G088500.1 pacid=42785283 polypeptide=Potri.003G088500.1.p locus=Potri.003G088500 ID=Potri.003G088500.1.v4.1 annot-version=v4.1 ATGAAGCTCTCCCTCAATCTTCAAGATGACCACCAAATCCAAAACCCTCTCTTGAAGGCCAAACTACCCATTTCAATACTCAATCAACCTTTCACTTCTA TCCTCACTACCACCACAACAAACTCCATTTCTGACCTCACTCTTGCTCTATCTACGAACTTCCCTACAGGCCCTTCTCTCAAGCTTACCTACACTCCATC CACAACAACAACCATTTCTCCTTTCTCTCTCTCTCTTAAATCAGGCTTGGGCCTTTTTGGTTCTCCACACGATTCCCCTCTTGTTTTCTCTGCTCAGTTT TCTCTCCCCAATTCAAGCTCCAACTTGATTTTACCTTCTTTCTCTCTCCAATTCAAGCCACAATTTGGCCATTTCTCACTCCACAAAAGAACCACCACTC CATCTTCAAACCCTAACTATGATCTCAATTGTGGGTCCCAAACCACAAATAGGCCCCATTTGGAATCTGGGTCACCTTCAAAATCTGAACCTGGAAATGG GTTTGCCTCAGATGGGTCATCAGGTTGGCAAGAATTGAAATTAGAGCCATGTAATGGTAAAGAGAAAGAGGGGTTTGTGAATCATAATTACATTGATGAT GCTTATGGAATTGGGTTTTCTCCGGAGAGGCAATTAATGTGGAAATATGGAAAGAAGAGAGGGTTTTTTAGTGGAGTTGGTGTAAAGGCAAAAACAGCGT TGCCACTGACTAAAAGGGTATTGATGAATTTGAGGTGGGCTGTGAATTTTCCTGGTGAGTTGGGAATAAAAATGCCCTACTTGATAGTGAATAAGATTGG GATTGAGAGGGTTGAGGAGTTAAAGGAAGTAAAGAAGGAAAAAAGCAATGAGAGTAATTTGGGAGATTTAGAGTTGTTGAAAGGAATGTGCTTTTGGATG ACAAGGGATTTGGAGGTGTTAGAGGCTGAGAATAGGGAGATGAAGCACTATTTAGAGAATATGAGACTGGGAATTTTGGCGAGGAATTCGCGCAAAGAGA TCAATGGTTTTGTTAAGAGAGTGGTGCCAGCTTCAAGTGGTAATCTTGGTGGGTTTGAGCAGTGGAGGAGCAACAAAAATAATGGAGAAGGAAATGGGCA AAGAGAAGAATTGAAGAAGCCTGCAAAGAAGGTGACTGACTTGGAAAGTGAGTTGCAAAAAGCTATTAAAGCTGCTTCCTCTTAA
AA sequence Show only first row Show all	>Potri.003G088500.1 pacid=42785283 polypeptide=Potri.003G088500.1.p locus=Potri.003G088500 ID=Potri.003G088500.1.v4.1 annot-version=v4.1 MKLSLNLQDDHQIQNPLLKAKLPISILNQPFTSILTTTTTNSISDLTLALSTNFPTGPSLKLTYTPSTTTTISPFSLSLKSGLGLFGSPHDSPLVFSAQF SLPNSSSNLILPSFSLQFKPQFGHFSLHKRTTTPSSNPNYDLNCGSQTTNRPHLESGSPSKSEPGNGFASDGSSGWQELKLEPCNGKEKEGFVNHNYIDD AYGIGFSPERQLMWKYGKKRGFFSGVGVKAKTALPLTKRVLMNLRWAVNFPGELGIKMPYLIVNKIGIERVEELKEVKKEKSNESNLGDLELLKGMCFWM TRDLEVLEAENREMKHYLENMRLGILARNSRKEINGFVKRVVPASSGNLGGFEQWRSNKNNGEGNGQREELKKPAKKVTDLESELQKAIKAASS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57990			unknown protein		Potri.003G088500 [exp]	0	1
AT3G60410			Protein of unknown function (D...		Potri.002G136200 [exp]	5.38	0.9073
AT1G11050			Protein kinase superfamily pro...		Potri.017G132800 [exp]	7.21	0.9272
AT5G65250			unknown protein		Potri.005G073500 [exp]	8.94	0.9236
AT3G15780			unknown protein		Potri.001G192500 [exp]	11.83	0.9269
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Potri.014G112700 [exp]	11.87	0.8976
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Potri.011G024100 [exp]	13.07	0.9303
AT5G53330			Ubiquitin-associated/translati...		Potri.012G033300 [exp]	16.09	0.9237
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Potri.008G136800 [exp]	19.74	0.9112	Pt-HSF5.2
AT3G07565			Protein of unknown function (D...		Potri.014G197300 [exp]	19.77	0.9125
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Potri.001G144500 [exp]	20.04	0.9307	NAP6.2

Compare expression of checked genes

Potri.003G088500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.