Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32440 836 / 0 PKP3 plastidial pyruvate kinase 3 (.1) AT5G52920 776 / 0 PKP-BETA1, PKP2, PKP1 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) AT3G22960 367 / 3e-120 PKP-ALPHA, PKP1 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) AT5G63680 288 / 8e-91 Pyruvate kinase family protein (.1) AT5G08570 287 / 2e-90 Pyruvate kinase family protein (.1) AT5G56350 279 / 3e-87 Pyruvate kinase family protein (.1) AT3G25960 276 / 2e-86 Pyruvate kinase family protein (.1) AT4G26390 276 / 2e-86 Pyruvate kinase family protein (.1) AT3G55650 275 / 1e-85 Pyruvate kinase family protein (.1) AT3G04050 263 / 5e-81 Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G145300 [exp] 1061 / 0 AT1G32440 846 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.012G034000 [exp] 788 / 0 AT5G52920 970 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Potri.010G080700 [exp] 369 / 9e-121 AT3G22960 930 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.008G159700 [exp] 367 / 4e-120 AT3G22960 945 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.009G084700 [exp] 320 / 4e-102 AT3G22960 620 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.001G289300 [exp] 317 / 4e-101 AT3G22960 623 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 281 / 6e-88 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1) Potri.013G060400 [exp] 280 / 2e-87 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1) Potri.010G254900 [exp] 279 / 3e-87 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000672 [exp] 884 / 0 AT1G32440 830 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10011057 [exp] 879 / 0 AT1G32440 827 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10039316 [exp] 741 / 0 AT5G52920 902 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Lus10039396 [exp] 369 / 5e-121 AT3G22960 934 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10006633 [exp] 365 / 2e-119 AT3G22960 920 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10012446 [exp] 320 / 2e-102 AT3G22960 616 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10033756 [exp] 304 / 8e-96 AT3G22960 599 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10041003 [exp] 285 / 3e-89 AT5G08570 928 / 0.0 Pyruvate kinase family protein (.1) Lus10017364 [exp] 282 / 3e-88 AT5G08570 907 / 0.0 Pyruvate kinase family protein (.1) Lus10010329 [exp] 280 / 2e-87 AT5G56350 930 / 0.0 Pyruvate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [poplar] [flax] PK_TIM PF00224 [poplar] [flax] PK Pyruvate kinase, barrel domain CL0151 [poplar] [flax] PF02887 [poplar] [flax] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Potri.003G088700.1 pacid=42786394 polypeptide=Potri.003G088700.1.p locus=Potri.003G088700 ID=Potri.003G088700.1.v4.1 annot-version=v4.1 ATGGCAACGATCAACAATATGTCGACGAGAATGTGTAGGGATCATCGGATTTTGTCGTCGTCGGGTAACTTGAGTGATGTGTTTGTGTTGGAATCAAGGT TTAGAAAGAGATGTTTCTTCCAAAATTCCAAATTTACTGTTAGATCTATGAAAGCCAATGAGCAGAACCAGACGAGAAAGCTTGCGTCTTCTAACGGGCC CTTAACGGCTTCTGAAAAGGTGAGCTCTCCTTTTGAGCTTCTGACCAACAATCAAACTCTGGGAAAGGAAAATATAAATCCAATTGCTCGAAGGAAAACA AAAATAGTTTGTACAATTGGTCCTTCCACAAGCTCGCGTGAAATGATATGGAAACTGGCAGAAACTGGAATGAACGTGGCCCGGTTGAATATGTCGCACG GAGACCATTCTTCCCACAAGAAAACTATCGATCTGGTCAAAGAGTATAATGCACAATCTGACGACAATGTTATTGCCATAATGCTAGACACTAAGGGTCC TGAGGTTAGAAGTGGAGATGTGCCTCAACCAATTATTCTCAAGGAGGGACAAGAGTTTAATTTCACCATCAAAAGAGGAGTCAGCACTGAAGACACTGTT AGTGTGAACTATGATGACTTTATAAATGACGTGGAGGCTGGGGACATGCTACTGGTGGATGGTGGAATGATGTCATTATCTGTGAAGTCAAAGACAAAGG ATGCAGTTAAATGTGTGGTAGTTGATGGTGGAGAACTAAAATCAAGGCGCCATTTAAATGTGCGGGGAAAAAGTGCAACTTTGCCTTCAATTACAGACAA AGACTGGGAAGATATCAAATTTGGGGTGGATAACCAAGTTGATTTTTATGCCGTGTCCTTTGTAAAGGATGCAAAAGTGGTTCACGAGTTGAAAGATTAT CTCACAAGCTGCAATGCTGACATCCATGTGATTGTAAAAATTGAAAGTGCTGACTCAATACCAAATCTCCAGTCAATAATTTCTGCATCAGACGGGGCAA TGGTTGCTCGTGGAGACCTCGGTGCTGAACTTCCAATAGAGGATGTCCCTTTATTGCAGGAAGACATCATTAGAAGGTGTCACAACATGCAGAAGCCTGT TATTGTAGCAACAAACATGCTGGAAAGCATGATTGATCATCCTACACCAACAAGGGCTGAGGTTTCTGACATAGCAATTGCAGTACGTGAAGGTGCTGAT GCAGTCATGCTTTCAGGAGAAACTGCCCATGGAAAGTATCCACTTAAAGCTGTCAAAGTCATGCACACAGTGGCATTGAGAACAGAATCAAGTCTGCCAT TTAACACAACAGCTCCAACCCACAATGTATATAAGAGCCATATGGGTGAAATGTTTGCTTTCCATGCCACAATTATGGCTAACACTCTCAATACACCTAT CATTGTCTTCACAAGAACAGGGTCCATGGCTATACTTTTAAGCCATTATCGGCCTGCCTCAACAATATTTGCCTTCACAAATGAAGAAAGGATAAAGCAG AGGCTGGCACTTTATCAGGGTGCCATGCCAATATACATGCAGTTTTCAGACGACGCAGAGGAGACCTTTGCCCGAGCACTCAAGCTATTATTGAGTAAGG GTCTGTTGATGGAAGGACAGAATGTTACCCTTGTCCAGAGTGGAGCGCAACCTATATGGCGTCGAGAATCTACTCATCATATTCAAGTTCGCAAGGTCCA GGCCTAA
AA sequence Show only first row Show all	>Potri.003G088700.1 pacid=42786394 polypeptide=Potri.003G088700.1.p locus=Potri.003G088700 ID=Potri.003G088700.1.v4.1 annot-version=v4.1 MATINNMSTRMCRDHRILSSSGNLSDVFVLESRFRKRCFFQNSKFTVRSMKANEQNQTRKLASSNGPLTASEKVSSPFELLTNNQTLGKENINPIARRKT KIVCTIGPSTSSREMIWKLAETGMNVARLNMSHGDHSSHKKTIDLVKEYNAQSDDNVIAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTV SVNYDDFINDVEAGDMLLVDGGMMSLSVKSKTKDAVKCVVVDGGELKSRRHLNVRGKSATLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDY LTSCNADIHVIVKIESADSIPNLQSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCHNMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGAD AVMLSGETAHGKYPLKAVKVMHTVALRTESSLPFNTTAPTHNVYKSHMGEMFAFHATIMANTLNTPIIVFTRTGSMAILLSHYRPASTIFAFTNEERIKQ RLALYQGAMPIYMQFSDDAEETFARALKLLLSKGLLMEGQNVTLVQSGAQPIWRRESTHHIQVRKVQA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Potri.003G088700 [exp]	0	1
AT5G52450			MATE efflux family protein (.1...		Potri.012G051900 [exp]	1.41	0.9445
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038300 [exp]	7.07	0.9138
AT5G54290		CcdA	cytochrome c biogenesis protei...		Potri.001G406700 [exp]	8.00	0.9402
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Potri.016G065900 [exp]	8.94	0.9346
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Potri.008G029300 [exp]	9.48	0.9349
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.012G033500 [exp]	11.22	0.9257
AT5G05740		ATEGY2	ethylene-dependent gravitropis...		Potri.008G066500 [exp]	14.79	0.9411
AT2G29630		PY, THIC	PYRIMIDINE REQUIRING, thiaminC...		Potri.001G249200 [exp]	15.49	0.9379
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033300 [exp]	17.86	0.9345
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Potri.015G105100 [exp]	18.89	0.9376	Pt-CLPC.2

Compare expression of checked genes

Potri.003G088700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.