Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32450 978 / 0 NRT1.5 nitrate transporter 1.5 (.1) AT4G21680 794 / 0 NRT1.8 NITRATE TRANSPORTER 1.8 (.1) AT5G19640 655 / 0 Major facilitator superfamily protein (.1) AT3G54140 502 / 1e-172 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02040 482 / 1e-164 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 467 / 8e-159 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT5G01180 462 / 7e-157 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02020 414 / 1e-138 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT2G26690 383 / 4e-126 Major facilitator superfamily protein (.1) AT3G54450 372 / 3e-122 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G145200 [exp] 1154 / 0 AT1G32450 949 / 0.0 nitrate transporter 1.5 (.1) Potri.014G179400 [exp] 892 / 0 AT1G32450 791 / 0.0 nitrate transporter 1.5 (.1) Potri.001G013400 [exp] 689 / 0 AT5G19640 754 / 0.0 Major facilitator superfamily protein (.1) Potri.003G212900 [exp] 688 / 0 AT5G19640 750 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 509 / 2e-175 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.001G248600 [exp] 491 / 2e-168 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 485 / 4e-166 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 484 / 1e-165 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 481 / 2e-164 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030945 [exp] 957 / 0 AT1G32450 920 / 0.0 nitrate transporter 1.5 (.1) Lus10040102 [exp] 953 / 0 AT1G32450 910 / 0.0 nitrate transporter 1.5 (.1) Lus10000673 [exp] 945 / 0 AT1G32450 931 / 0.0 nitrate transporter 1.5 (.1) Lus10011058 [exp] 936 / 0 AT1G32450 926 / 0.0 nitrate transporter 1.5 (.1) Lus10013736 [exp] 652 / 0 AT5G19640 728 / 0.0 Major facilitator superfamily protein (.1) Lus10039204 [exp] 647 / 0 AT5G19640 727 / 0.0 Major facilitator superfamily protein (.1) Lus10030287 [exp] 547 / 0 AT1G32450 542 / 0.0 nitrate transporter 1.5 (.1) Lus10011055 [exp] 503 / 5e-173 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 503 / 1e-172 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 500 / 2e-171 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.003G088800.1 pacid=42784904 polypeptide=Potri.003G088800.1.p locus=Potri.003G088800 ID=Potri.003G088800.1.v4.1 annot-version=v4.1 ATGGCTTGTTTGCAGGTGTGTAAGGAGGATAAGTTCAAAGAGGGAGAAGGAGAATGCACTTTTGATGGAACAGTTGATTGGCATGGTCGTCCTGCTATCA AAGCCAAATCTGGACAGTGGGCTGCTGGAATCATTATACTCTTGAACCAGGGCCTGGCAACACTTGCATTCTTTGGTGTTGGTGTGAACTTAGTTCTGTT CCTGACAAGGGTTTTGCAACAAAGCAACGCCGATGCTGCTAATAACGTTAGCAAATGGACCGGAACGGTCTACATCTTCTCTCTTGTCGGTGCTTTCCTT AGTGATTCCTACTGGGGAAGATACAAGACTTGTGCAGTTTTTCAGGTCATCTTTGTCATAGGTCTGGTAATCCTATCACTCGCATCCCACCTATTTTTAA TCAGACCAAAAGGATGTGGAGATGAGCTGACTCCATGTGGATCCCATTCAAGCATGGAAGTTTCATTGTTTTACCTCTCCATTTACCTCATTGCTCTAGG AAATGGAGGGTATCAACCTAACATTGCTACATTTGGGGCCGATCAGTTTGATGAAGACGACCCTAGGGAAGGATATTCAAAGGTTGCATTTTTCAGCTAT TTCTACCTCGCCCTGAACCTTGGTTCCCTCTTTTCCAACACCATATTGGGGTATTTTGAGGATGAAGGGATGTGGGCACTAGGATTCTGGATGTCTGCAG GTTCTGCCTTTGCAGCACTGGTATTGTTTCTAGGAGGAACAGCTAGATACCGGCACTTTAAACCAAGTGGTAACCCTCTCTCCAGGTTCGGCCAAGTTAT CATAGCCGCGATGAAGAAATGTAGGGTCGAGATGCCACCAGATGGAGAGGAGGAGCTGTACGATGTGGATAGAAAAGATTGCTCCATGAATGGCAACAGA AAGATTCTCCACACTGACGGATTCAAGTTCTTAGATAGAGCAGCTTTCATCTCTTCAAGAGATATTGATGATCAAAAGCGGGGCTGTCGCAACCCATGGC GTCTCTGCCCAATTACACAAGTAGAAGAAGTTAAATGCATACTGAGACTACTCCCAATTTGGCTCTGCACCATAATCTATTCAGTGGTTTTCACACAGAT GGCCTCTCTGTTTGTGGAACAAGGTGCTGCAATGAAAACAACCATTTCAAACTTCAAAATCCCTCCTGCCAGCATGTCTACCTTCGATATTCTCAGTGTT GCATTTTTTATTTTCCTATATCGGCGAGTTCTTGATCCACTTGTGAGCAGTTTTAAACAGACAAGCTCAAAAGGACTAACTGAACTTCAAAGAATGGGTG TTGGCCTTGTGATCGCGATAATGGCAATGGTTTCGGCTGGGCTTGTGGAGTGTTATAGACTCAAGTATGCAAGAAAAGATTGCAAACATTGTGAAGGCTC AAGCTCCTTGAGCATCTTCTGGCAAGCTCCTCAGTATGCACTCATTGGAGCTTCTGAAGTTTTCATGTATGTTGGTCAACTGGAGTTCTTTAATGCACAA ACACCCGATGGATTAAAGAGCTTTGGGAGTGCACTTTGCATGACTTCTATCTCGCTAGGGAATTATGTGAGTAGCTTGCTTGTGACTATGGTTGTGAAGA TCTCAACTGAGGATCATATGCCCGGATGGATCCCAGGAAATCTGAACACAGGTCACCTTGACAGGTTTTACTTCCTCTTAGCAGGCTTGACGACTATAGA CTTAGTTGTGTATATGGCATGTGCTAGGTGGTACAAGAGTATCAAGCTGGAAAAGAAATGCGAGGAGAATGATCATGAAGAGAACTTCAGAGTCTGA
AA sequence Show only first row Show all	>Potri.003G088800.1 pacid=42784904 polypeptide=Potri.003G088800.1.p locus=Potri.003G088800 ID=Potri.003G088800.1.v4.1 annot-version=v4.1 MACLQVCKEDKFKEGEGECTFDGTVDWHGRPAIKAKSGQWAAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQSNADAANNVSKWTGTVYIFSLVGAFL SDSYWGRYKTCAVFQVIFVIGLVILSLASHLFLIRPKGCGDELTPCGSHSSMEVSLFYLSIYLIALGNGGYQPNIATFGADQFDEDDPREGYSKVAFFSY FYLALNLGSLFSNTILGYFEDEGMWALGFWMSAGSAFAALVLFLGGTARYRHFKPSGNPLSRFGQVIIAAMKKCRVEMPPDGEEELYDVDRKDCSMNGNR KILHTDGFKFLDRAAFISSRDIDDQKRGCRNPWRLCPITQVEEVKCILRLLPIWLCTIIYSVVFTQMASLFVEQGAAMKTTISNFKIPPASMSTFDILSV AFFIFLYRRVLDPLVSSFKQTSSKGLTELQRMGVGLVIAIMAMVSAGLVECYRLKYARKDCKHCEGSSSLSIFWQAPQYALIGASEVFMYVGQLEFFNAQ TPDGLKSFGSALCMTSISLGNYVSSLLVTMVVKISTEDHMPGWIPGNLNTGHLDRFYFLLAGLTTIDLVVYMACARWYKSIKLEKKCEENDHEENFRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Potri.003G088800 [exp]	0	1
AT4G00910			Aluminium activated malate tra...		Potri.001G085900 [exp]	5.00	0.9723
AT1G65570			Pectin lyase-like superfamily ...		Potri.010G177501 [exp]	6.78	0.9715
AT1G71140			MATE efflux family protein (.1...		Potri.019G075800 [exp]	8.24	0.8962
AT3G12900			2-oxoglutarate (2OG) and Fe(II...		Potri.005G097900 [exp]	10.95	0.9667
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181100 [exp]	12.64	0.9664	Pt-NRAMP1.4
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134501 [exp]	13.03	0.9576
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181000 [exp]	13.85	0.9661
AT4G19690		ATIRT1, IRT1	ARABIDOPSIS IRON-REGULATED TRA...		Potri.015G117900 [exp]	14.49	0.9656	Pt-ZIP6.4
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Potri.013G049925 [exp]	18.16	0.9615
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.015G006000 [exp]	18.97	0.9615

Compare expression of checked genes

Potri.003G088800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.