Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46570 820 / 0 BSK2 BR-signaling kinase 2 (.1) AT4G35230 609 / 0 BSK1 BR-signaling kinase 1 (.1) AT5G59010 602 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT3G54030 594 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G63500 590 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G41260 582 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT4G00710 571 / 0 BSK3 BR-signaling kinase 3 (.1) AT1G01740 515 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT3G09240 498 / 3e-174 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G50990 492 / 2e-171 Protein kinase protein with tetratricopeptide repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G179300 [exp] 804 / 0 AT5G46570 814 / 0.0 BR-signaling kinase 2 (.1) Potri.004G182800 [exp] 617 / 0 AT4G35230 899 / 0.0 BR-signaling kinase 1 (.1) Potri.009G142800 [exp] 613 / 0 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1) Potri.006G093900 [exp] 610 / 0 AT3G54030 844 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.016G105800 [exp] 607 / 0 AT3G54030 835 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.009G039500 [exp] 605 / 0 AT5G59010 857 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.002G011800 [exp] 604 / 0 AT4G35230 836 / 0.0 BR-signaling kinase 1 (.1) Potri.001G246400 [exp] 598 / 0 AT5G59010 868 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.005G249300 [exp] 597 / 0 AT4G35230 836 / 0.0 BR-signaling kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031967 [exp] 778 / 0 AT5G46570 779 / 0.0 BR-signaling kinase 2 (.1) Lus10035136 [exp] 775 / 0 AT5G46570 779 / 0.0 BR-signaling kinase 2 (.1) Lus10040719 [exp] 607 / 0 AT5G59010 820 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10027743 [exp] 595 / 0 AT3G54030 824 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10035550 [exp] 590 / 0 AT3G54030 817 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10001998 [exp] 578 / 0 AT1G63500 811 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10016454 [exp] 577 / 0 AT5G59010 774 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10008530 [exp] 575 / 0 AT1G63500 834 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10008494 [exp] 570 / 0 AT1G63500 831 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10034573 [exp] 570 / 0 AT4G35230 778 / 0.0 BR-signaling kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.003G088900.1 pacid=42787526 polypeptide=Potri.003G088900.1.p locus=Potri.003G088900 ID=Potri.003G088900.1.v4.1 annot-version=v4.1 ATGGGTTGCTTTTATTCTCGAACCATCCACCTTCCCTCCCCCGACGACCTCTCTAAGCTTCACTCAGAAAATGGGGATGAGGGTGGTCAAGTCCAACAAG TGCCAGCATTCAAAGAGTATAGTTTGAGCGAGCTAAGAAAGGCCACAAATGGGTTTTGCCCAGATTTTATCGTCTCTGAGAGTGGTGAGAAAGCGCCTAA TGTTGTTTATAGGGGTATTCTTGACAACAATCATTTGGTGGCTGTTAAAAGGTTCTCTAAACTGGCATGGCCTGATGCTCAACAGTTTGTGGTGGAAGCG GCAGGGGTGGGGAAGTTGAGGCACAGGAGACTGGTAAATCTGATTGGTTGCTGTAATGAAGGTGATGAAAGATTGTTGGTAGCGGAGTACATGCCCAATG ATACCCTTTCCAAGCACCTCTTCCACTGGGACAAGCAGCCACTGGCATGGGAAATGCGCGTTAGAGTTGCCCATTACATTGCACAAGCACTTGATTATTG TAATACAGAGAACCGGAAGATCTATCACGATTTGAATGCATACAGAATTCTTTTTGATGAGGATGGTGACCCATGTTTGTCGAGTTTTGGCCTTATGAAA AATAGTAGAGATGGAAAAAGCTACAGTACAAATTTGGCTTACACTCCACCTGAGTTCTTGCGGACAGGCAGAGTCATTCCAGAGAGCGTGATCTACAGTT ATGGAACTGTTCTATTGGATCTTTTGAGTGGAAAGCACATTCCTCCTAGCCGTGCCCTAGACATAATAAGGGGAAAAAATGTTCTGATGTTGATGGATTC ATCGTTGGAGGGGCAGTATGCCAGCGATGATGCTACTAATTTGGTGGAACTTGCTTCAAAATGTCTTCAATCTGAGGCTAGGGATCGGCCTGATCCCAAG TTTCTCCTCGCAGCAGTTGCACCACTTCAAAAACAGAAAGAGGTTGCATCTTACATTCTCATGGGCTTGTCTAAAGATACAGTTACTCTGCCAACCATTC TTTCTCCAATTGGGAAGGCTTGTGCCAGGATGGATCTTACTGCTGTACATGATATTTTGCTTAAAACTGGTTACAAAGATGAAGAGGGCGCAGAAAATGA GCTTTCATTTCAAGAATGGACACAGCAAGTGCAAGATATATTGAACACCAAGAAGTTTGGGGATATTGCATTCAGGGACAGTGATTTCAATAATGCAATT GAATATTATTCAAAGTTGGTAAATCTGATGTCAATTCCTTCTGCAACTGTCTTTGCAAGGAGAGCCTTCTCCTGCTTGATGAATGGCCAAGCAGAACTCG CACTGAGGGATGCCATGCAGGCTCAAGTGTGCATACCAGAGTGGCCAACTGCATTCTACTTGCAGGCTCTTGCACTCTCAAAGCTTGGAATGGAAACTGA TGCTAAAGACATGCTTAATGATGGGGCAGTCCTCGAAGTGAAGTGGCAGAGTAGATACAAATTTTAG
AA sequence Show only first row Show all	>Potri.003G088900.1 pacid=42787526 polypeptide=Potri.003G088900.1.p locus=Potri.003G088900 ID=Potri.003G088900.1.v4.1 annot-version=v4.1 MGCFYSRTIHLPSPDDLSKLHSENGDEGGQVQQVPAFKEYSLSELRKATNGFCPDFIVSESGEKAPNVVYRGILDNNHLVAVKRFSKLAWPDAQQFVVEA AGVGKLRHRRLVNLIGCCNEGDERLLVAEYMPNDTLSKHLFHWDKQPLAWEMRVRVAHYIAQALDYCNTENRKIYHDLNAYRILFDEDGDPCLSSFGLMK NSRDGKSYSTNLAYTPPEFLRTGRVIPESVIYSYGTVLLDLLSGKHIPPSRALDIIRGKNVLMLMDSSLEGQYASDDATNLVELASKCLQSEARDRPDPK FLLAAVAPLQKQKEVASYILMGLSKDTVTLPTILSPIGKACARMDLTAVHDILLKTGYKDEEGAENELSFQEWTQQVQDILNTKKFGDIAFRDSDFNNAI EYYSKLVNLMSIPSATVFARRAFSCLMNGQAELALRDAMQAQVCIPEWPTAFYLQALALSKLGMETDAKDMLNDGAVLEVKWQSRYKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46570		BSK2	BR-signaling kinase 2 (.1)		Potri.003G088900 [exp]	0	1
AT5G19670			Exostosin family protein (.1)		Potri.018G085400 [exp]	1.73	0.8624
AT4G27190			NB-ARC domain-containing disea...		Potri.001G445700 [exp]	4.00	0.8656
AT4G27190			NB-ARC domain-containing disea...		Potri.001G446016 [exp]	5.29	0.8685
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.007G007400 [exp]	6.92	0.8100
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Potri.018G121500 [exp]	7.34	0.8359
AT4G27220			NB-ARC domain-containing disea...		Potri.001G443400 [exp]	8.06	0.8143
AT1G13750			Purple acid phosphatases super...		Potri.010G158400 [exp]	10.95	0.7994
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Potri.016G031600 [exp]	16.37	0.8392
AT4G11450			Protein of unknown function (D...		Potri.003G127500 [exp]	16.97	0.8244
AT1G79910			Regulator of Vps4 activity in ...		Potri.003G054601 [exp]	18.02	0.7639

Compare expression of checked genes

Potri.003G088900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.