Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35360 267 / 6e-91 ubiquitin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004553 [exp] 193 / 6e-62 AT2G35360 185 / 3e-59 ubiquitin family protein (.1) Lus10000895 [exp] 116 / 4e-32 AT2G35360 97 / 4e-25 ubiquitin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family CL0072 [poplar] [flax] PF10260 [poplar] [flax] SAYSvFN Uncharacterized conserved domain (SAYSvFN)
Representative CDS sequence Show only first row Show all	>Potri.003G089400.1 pacid=42784700 polypeptide=Potri.003G089400.1.p locus=Potri.003G089400 ID=Potri.003G089400.1.v4.1 annot-version=v4.1 ATGGGAGAGATTAATGAAGAAGACGAAGCAAAGAGCAATCACAGCAACATCGACGATAATGGTAATATGGCTGAAATCACCGTCAAAACTATTGGCCCTT CTCCTCCATCTCGCCTCCTCCTTCCTTCTCCCATCAAAGTCCGTGATTTGAGGAAGTTGGTTGCTGAAAATAGGCACCTACCAATTGAGAATTTAAGGCT TATCTTGCGCGGGAATGTATTGCATGATAGTAGAGATGAGGATGATATACGGCTTAATAATGGAGATTCCCTGATTGTCGCTGTCAAACCAAAGCCGCCA GCAAAACATCTCCGAGATGGATTTGACGATGATGATGATGATCTGAAGTTTCAGCTGCCACAATCAGCAAGTCGGTGGAAGAGGAGGCTTTATTTCTTTC TGCATGATAAGTTAAAGCTCCCTGATATCCTTTTGATGGGACTTTTCTCTCTCAGTCTGAAGGCATGGGCTGTTTTTATTTTATGGTTCATTTTGGCACC TGTTGCCCACAGATGGGATCTGGGACCAATATATATAATCGGCACTGGCTTTGTTATCATCCTTCTGAATCTTGGGCGGAGGCAAGCTGGTGATCTCAGC GCGTATTCTATCTTCAATGAAGACTTTAGGGAGCTTCCTGGGACCCTTAACGCAGATCGCCTGGATAGAGACATTCGGGCCGGCCAGTTTTGA
AA sequence Show only first row Show all	>Potri.003G089400.1 pacid=42784700 polypeptide=Potri.003G089400.1.p locus=Potri.003G089400 ID=Potri.003G089400.1.v4.1 annot-version=v4.1 MGEINEEDEAKSNHSNIDDNGNMAEITVKTIGPSPPSRLLLPSPIKVRDLRKLVAENRHLPIENLRLILRGNVLHDSRDEDDIRLNNGDSLIVAVKPKPP AKHLRDGFDDDDDDLKFQLPQSASRWKRRLYFFLHDKLKLPDILLMGLFSLSLKAWAVFILWFILAPVAHRWDLGPIYIIGTGFVIILLNLGRRQAGDLS AYSIFNEDFRELPGTLNADRLDRDIRAGQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35360			ubiquitin family protein (.1)		Potri.003G089400 [exp]	0	1
AT1G53035			unknown protein		Potri.004G044000 [exp]	33.94	0.7885
AT4G20330			Transcription initiation facto...		Potri.001G107500 [exp]	36.02	0.7812
AT4G03240		ATFH, FH	frataxin homolog (.1)		Potri.013G150400 [exp]	37.73	0.7823
AT5G10810		ATER	ARABIDOPSIS THALIANA ENHANCER ...		Potri.006G265600 [exp]	42.66	0.7393
					Potri.013G070900 [exp]	54.47	0.7240
AT3G05070			unknown protein		Potri.004G067300 [exp]	76.21	0.7651
AT4G17370			Oxidoreductase family protein ...		Potri.003G078500 [exp]	84.10	0.7586
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Potri.001G236900 [exp]	90.71	0.7240
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Potri.010G084800 [exp]	109.95	0.7284	PBD2.2
AT3G06610			DNA-binding enhancer protein-r...		Potri.008G105000 [exp]	135.05	0.7342

Compare expression of checked genes

Potri.003G089400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.