Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46580 986 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G16390 423 / 2e-138 SVR7 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) AT1G18900 167 / 5e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT5G39980 154 / 4e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74750 151 / 1e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G31400 147 / 3e-36 GUN1 genomes uncoupled 1 (.1) AT5G02860 146 / 3e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74850 130 / 3e-31 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT2G18940 129 / 7e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 127 / 2e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G006800 [exp] 488 / 1e-163 AT4G16390 916 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G019000 [exp] 469 / 3e-156 AT4G16390 939 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G018600 [exp] 408 / 3e-133 AT4G16390 818 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.015G066400 [exp] 158 / 5e-40 AT1G18900 1107 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Potri.017G075700 [exp] 149 / 1e-37 AT5G39980 1045 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G193900 [exp] 139 / 7e-34 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.014G118500 [exp] 136 / 7e-33 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.006G264800 [exp] 135 / 2e-32 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.013G144800 [exp] 133 / 6e-32 AT1G73710 1206 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004555 [exp] 977 / 0 AT5G46580 960 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10000897 [exp] 961 / 0 AT5G46580 945 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10039071 [exp] 424 / 1e-138 AT4G16390 808 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10038788 [exp] 415 / 2e-135 AT4G16390 802 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013894 [exp] 150 / 2e-37 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033110 [exp] 150 / 2e-37 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Lus10041429 [exp] 148 / 3e-37 AT5G39980 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034342 [exp] 147 / 9e-37 AT5G39980 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002107 [exp] 143 / 3e-35 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 141 / 1e-34 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.003G089600.1 pacid=42785116 polypeptide=Potri.003G089600.1.p locus=Potri.003G089600 ID=Potri.003G089600.1.v4.1 annot-version=v4.1 ATGGCTGCCAGTCTTTCTACAGCTCTCGATGTCCATTTTACAATACCAAAATCAGATACAAAGAGACCCATTTTCTTCACTTCACCAATCAGGCATAACC CCACCAAGAAAAGACTCGCCATTTCTTGCAACTCTTCCACCTCAGAAACATCATCCTCTACAAAACCACCACAAAATCTCTCAGAATCACCCAGCCCCAA AAACCCTTCTTTATCTGACCAACTCAAGCCTCTCTCCGCAACCACTCTCTCCACCAAAGACCATAAAGCTCAACTCTTGTCAAAACCCAAGTCCACATGG GTCAACCCCACAAGACCAAAAAGGTCAGTGCTTTCACTTCAAAGGCAAAAGAAGTCTCTTTACTCTTACAATCCTCAAATTAGAGAGTTGAAACTCTTTG CGAAGAAGCTGAATGATTGTGGTTCTGGTGAGGATGAGTTTGAGTCTGTTCTTGAGACAATCCCATACCCACCAACTAGAGAAAATGCTCTCTTGATACT CAATAGCTTGAGGCCATGGCAAAAGACTCATCTTTTCTTCAACTGGATCAAGACCCGGAATGTATTTCCCATTGAAACCATATTCTACAATGTCACAATG AAGTCTTTGAGGTACGGGTTGCAGTTTGATATCATTGAGGAGCTTGCTAATGAGATGGTAAGCAATGAGATTCAGCTTGATAACATTACTTATTCAACTA TTATTACTTGTGCTAAAAAATGCAGTAGGTTTGATAAGGCTGTGGAGTGGTTTGAAAGAATGTATAAAACTGGATTAATGCCTGATGAGGTCACATATTC TGCTATTTTAGATGTTTATGCTAAATTAGGCAAGGTTGAAGAGGTTTTAAGTTTGTATGAGAGAGGGGTAGCTAGTGGGTGGAAACCCGACCCTATAACA TTCTCTGTATTGGCAAAGATGTTTGGTGAGGCTGGAGATTATGATGGCATTAGGTATGTTTTGCAAGAAATGAAGTCTCTTGGCGTGCAGCCTAATTTGG TTGTGTATAATACATTGTTGGAGGCAATGGGCAAGGCAGGGAAGCCTGGCTTGGCTAGAAGTTTATTTGAGGAGATGGTGGACTCAGGGCTAACCCCGAG TGAGAAAACACTAACTGCACTAGCTAAGATTTATGGTAAGGCTAGGTGGGCCAAGGATGCCATGGATTTATGGGAACGAATGAGGTCAAATAACTGGCCA ATGGATTTCATTTTATACAATACGCTGTTGAACATGTGCGCAGATCTTGGCCTCGTTGAGGAGGCCGAGATGTTATTTGAGGATATGAAGAGATCAGAGA AATGTAGGCCAGATAGTTGGACTTTCACTGCAATGCTAAATATATATGGCAGTGGAGGGAATGCTGATAAATCAATGGAGTTGTTTGAAGAGATGTCTAA GTTGGGTATTGGGCTTAATATAATGGGTTGCACTTGTTTGGTTCAGTGCTTAGGGAAGGCAAGAAGAATTGATGATTTGGTTAAAGTTTTTAATGTTGCG ATTGATGGAGGGGTTAAGCTGGATGATAGGTTTTGTGGGTGCCTGCTCTCTGTTGCATCGTTATGTGATGAGAGTGAGGATGTTGCTAAGGTCCTAGCTT GTTTGAAGCAAGCTAATCCAAGGTTGGTTGCCCTTGTGAGATTGATTGAAGAAGAAGAAACTAGCTTTGAGACCCTAAAAGAGGAGTTTAGGGCTGTTGT CAGCGGCGCCGTGGTGGAAACAAGAAGACCCTTTTGTAATTGCTTAATAGATATATGTAGGAAGAGAGATCTTCATGGGAGAGCACATGAGCTGCTCTAT CTGGGAACCCTTTACGGATTATACCCAGATTTACACCACAAGACTGTAAAGGAGTGGAGTTTGGATGTGCGCTCACTGTCTGTGGGTGCAGCTCACACTG CACTTGAAGAGTGGATGGGGACCTTGACCAAATTCGTGCAGCGCAATGAGGAATTGCCAGAGTTATTTTCAGCTCACACGGGTTCAGGAACTCACAAGTT CTCACAAGGCTTAGCCAATTCCTTTGATTCCCATGTGAAGAAACTTGCAGCACCTTTTAGGCAGAGTGAAGAGAGAGCTGGTCATTTCGTGGCCACACGG GAGGATTTAGTAACTTGGGTGCAATCAAGGATTCCGTCTTCGGTTACAGCACGAACCGCAATGTAA
AA sequence Show only first row Show all	>Potri.003G089600.1 pacid=42785116 polypeptide=Potri.003G089600.1.p locus=Potri.003G089600 ID=Potri.003G089600.1.v4.1 annot-version=v4.1 MAASLSTALDVHFTIPKSDTKRPIFFTSPIRHNPTKKRLAISCNSSTSETSSSTKPPQNLSESPSPKNPSLSDQLKPLSATTLSTKDHKAQLLSKPKSTW VNPTRPKRSVLSLQRQKKSLYSYNPQIRELKLFAKKLNDCGSGEDEFESVLETIPYPPTRENALLILNSLRPWQKTHLFFNWIKTRNVFPIETIFYNVTM KSLRYGLQFDIIEELANEMVSNEIQLDNITYSTIITCAKKCSRFDKAVEWFERMYKTGLMPDEVTYSAILDVYAKLGKVEEVLSLYERGVASGWKPDPIT FSVLAKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFEEMVDSGLTPSEKTLTALAKIYGKARWAKDAMDLWERMRSNNWP MDFILYNTLLNMCADLGLVEEAEMLFEDMKRSEKCRPDSWTFTAMLNIYGSGGNADKSMELFEEMSKLGIGLNIMGCTCLVQCLGKARRIDDLVKVFNVA IDGGVKLDDRFCGCLLSVASLCDESEDVAKVLACLKQANPRLVALVRLIEEEETSFETLKEEFRAVVSGAVVETRRPFCNCLIDICRKRDLHGRAHELLY LGTLYGLYPDLHHKTVKEWSLDVRSLSVGAAHTALEEWMGTLTKFVQRNEELPELFSAHTGSGTHKFSQGLANSFDSHVKKLAAPFRQSEERAGHFVATR EDLVTWVQSRIPSSVTARTAM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46580			pentatricopeptide (PPR) repeat...		Potri.003G089600 [exp]	0	1
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Potri.014G119700 [exp]	1.41	0.9859
AT1G02150			Tetratricopeptide repeat (TPR)...		Potri.014G050300 [exp]	1.73	0.9860
AT4G13670		PTAC5	plastid transcriptionally acti...		Potri.001G049900 [exp]	1.73	0.9851
AT2G40690		SFD1, GLY1	SUPPRESSOR OF FATTY ACID DESAT...		Potri.013G090900 [exp]	2.64	0.9828
AT2G22360			DNAJ heat shock family protein...		Potri.005G073900 [exp]	3.16	0.9836
AT3G25410			Sodium Bile acid symporter fam...		Potri.014G178000 [exp]	3.46	0.9836
AT5G42310			Pentatricopeptide repeat (PPR-...		Potri.005G250200 [exp]	3.60	0.9772
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000100 [exp]	4.24	0.9828
AT5G57180		CIA2	chloroplast import apparatus 2...		Potri.018G142100 [exp]	4.47	0.9746
AT5G46420			16S rRNA processing protein Ri...		Potri.001G353800 [exp]	4.89	0.9801

Compare expression of checked genes

Potri.003G089600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.