Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32500 544 / 0 ABCI7, ATNAP6 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1) AT4G04770 78 / 4e-15 ABCI8, ATNAP1, LAF6, ATABC1 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) AT5G44316 60 / 2e-09 ABCI9 ATP-binding cassette I9, Stabilizer of iron transporter SufD superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G144500 [exp] 842 / 0 AT1G32500 535 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1) Potri.004G016900 [exp] 73 / 1e-13 AT4G04770 924 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017374 [exp] 578 / 0 AT1G32500 550 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1) Lus10010168 [exp] 577 / 0 AT1G32500 550 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1) Lus10009638 [exp] 66 / 2e-13 AT1G32500 54 / 3e-10 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1) Lus10034750 [exp] 72 / 3e-13 AT4G04770 907 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) Lus10025788 [exp] 69 / 3e-12 AT4G04770 914 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) Lus10035874 [exp] 69 / 3e-12 AT4G04770 914 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01458 [poplar] [flax] SUFBD SUF system FeS cluster assembly, SufBD
Representative CDS sequence Show only first row Show all	>Potri.003G089700.1 pacid=42786532 polypeptide=Potri.003G089700.1.p locus=Potri.003G089700 ID=Potri.003G089700.1.v4.1 annot-version=v4.1 ATGTCTGTTTCAGCTTTCACTCCCCAAATTCACACACCCCTTACAATTAAACCCAAAATCAAGCACAGACAGAAACAGAAGCCCAAAAGCTTTTCACTTT TCACAACCCCAATAACACAAGCAAGTTTCTCTGACCCTTTTGTTCTTCAATTAGCCGAGACTCTTGAAGACTCCCTTTCTCCTTCTGTCTCTCTTCAAAA ACTCAGAGATTCCTCCTCTGAATCTCTTCTCTCTACTTCCTGGCCTTCTCGTAAAGATGAGCCCTTTAGGTTCACCGATACTTCATTCATCAGGCACTCA CAAATCCTTCCAATCACCAAACCACCACAATTAGATTATTTACCAAGCATTAATGGGGATACCCTCTTGCCTAATATTGTTATTGCTGATGGGTTTGTGT TAAATTCTATGTCAAAGGTGTCTACTTTACCTGATGGGGTTTATGTAGGTGGTTTGTTGAGTAATTCTAGTGATAGAATTGCCAAAAGGGTATTGGAGTT TGTAGGTGATTTTGAATGGGGTGATTTGTTTTGGTCAATTAATGGATTAGGAACTCCTGTTATGACTGTGGTTTATGTTCCTGCTGGTGTAAAGGTGGAC AATCCAATCCATTTTAAGTATGTTTCAGTCGAGGGAGGAGAGGAGGGGTCTAAAAAGTTGCCAGTTTCGAATCCGAGGGTGTTTGTAGTGGTGGAGGAGG GAGGGGAGGTTGGGATAATTGAGGAGTTCGTGAGTAAAGAAGGGAATGATGATAAGCGTTATTGGGCGAATCCTGTTCTAGAAGTGGTGATTGGGAAAGG AGCAAAGGTTCGGCATTCTTATGTGCAGAGTCAGTCCTTAAATTCTGCTCATATAAAGTGGACTGCAGTGCGACAGGAAGCAGCTAGTTCCTATGAGCTT GTAGAGGTAAGCACTGGTGGGAAATTGAGTAGGCACAATCTCCATGTTCAACAATTGGGCCCAGATACAGCAACTGAGTTATCAACTTTCCACTTGTCTG TTGGTGATCAAACACAAGATTTACACAGTAGGCTAGTCTTGGACCATCCAAGAGGTTATTCTCAGCAACTTCACAAGTGTATTGTTGCTCATTCACAAGG ACAAGCTGTCTTTGATGGGAATGTAAAGGTTAACAGATATGCTCAGCAGACAGATGCGGGACAATTAACAAGGAGCCTCCTCCTTGAACCACGTGCAACT GTGAATATCAAACCCAATCTCCAAATTATTGCTGATGATGTCAAGTGCTCCCATGGAGCTGCAATAAGTGATCTGGAAGAAACCCAACTCTTCTACTTTC AAGCACGTGGCATTGACCTAGAGACGGCTCGAAAAGCTCTTGTATTTTCCTTTGGTGCTGAGGTGATTGAGAAGTTACCCTATTCTTTCATCCGGAAACA AGTCGAGAATCATGTCAAGGGGTTGCTGGATTCCTCTTTCAAGGGATCCTCGCATTGA
AA sequence Show only first row Show all	>Potri.003G089700.1 pacid=42786532 polypeptide=Potri.003G089700.1.p locus=Potri.003G089700 ID=Potri.003G089700.1.v4.1 annot-version=v4.1 MSVSAFTPQIHTPLTIKPKIKHRQKQKPKSFSLFTTPITQASFSDPFVLQLAETLEDSLSPSVSLQKLRDSSSESLLSTSWPSRKDEPFRFTDTSFIRHS QILPITKPPQLDYLPSINGDTLLPNIVIADGFVLNSMSKVSTLPDGVYVGGLLSNSSDRIAKRVLEFVGDFEWGDLFWSINGLGTPVMTVVYVPAGVKVD NPIHFKYVSVEGGEEGSKKLPVSNPRVFVVVEEGGEVGIIEEFVSKEGNDDKRYWANPVLEVVIGKGAKVRHSYVQSQSLNSAHIKWTAVRQEAASSYEL VEVSTGGKLSRHNLHVQQLGPDTATELSTFHLSVGDQTQDLHSRLVLDHPRGYSQQLHKCIVAHSQGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRAT VNIKPNLQIIADDVKCSHGAAISDLEETQLFYFQARGIDLETARKALVFSFGAEVIEKLPYSFIRKQVENHVKGLLDSSFKGSSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Potri.003G089700 [exp]	0	1
AT5G01590			unknown protein		Potri.016G123900 [exp]	1.00	0.9768
AT1G59840		CCB4	cofactor assembly of complex C...		Potri.008G191900 [exp]	1.41	0.9677
AT3G06200			P-loop containing nucleoside t...		Potri.008G200600 [exp]	6.24	0.9539
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Potri.004G087100 [exp]	7.41	0.9636
AT5G52810			NAD(P)-binding Rossmann-fold s...		Potri.004G072500 [exp]	9.05	0.9433
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Potri.005G235000 [exp]	10.24	0.9446
AT5G07670			RNI-like superfamily protein (...		Potri.001G125800 [exp]	10.95	0.9541
AT1G80480		PTAC17	plastid transcriptionally acti...		Potri.003G030100 [exp]	12.16	0.9670
AT3G06200			P-loop containing nucleoside t...		Potri.010G029400 [exp]	13.56	0.9490
AT4G37510			Ribonuclease III family protei...		Potri.007G053000 [exp]	14.28	0.9616

Compare expression of checked genes

Potri.003G089700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.