Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17980 319 / 7e-109 NAC ANAC071 NAC domain containing protein 71 (.1) AT5G46590 301 / 3e-101 NAC ANAC096 NAC domain containing protein 96 (.1) AT1G32510 274 / 9e-91 NAC ANAC011 NAC domain containing protein 11 (.1) AT1G65910 241 / 7e-74 NAC ANAC028 NAC domain containing protein 28 (.1) AT3G17730 229 / 1e-73 NAC ANAC057 NAC domain containing protein 57 (.1) AT5G17260 228 / 2e-70 NAC ANAC086 NAC domain containing protein 86 (.1) AT3G03200 227 / 3e-70 NAC ANAC045 NAC domain containing protein 45 (.1) AT1G54330 221 / 5e-70 NAC ANAC020 NAC domain containing protein 20 (.1) AT3G10500 198 / 2e-58 NAC ANAC053 NAC domain containing protein 53 (.1) AT1G33060 197 / 3e-57 NAC ANAC014 NAC 014 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G144400 [exp] 684 / 0 AT4G17980 318 / 2e-108 NAC domain containing protein 71 (.1) Potri.010G174600 [exp] 234 / 1e-74 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.015G030200 [exp] 230 / 3e-74 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.008G081500 [exp] 233 / 6e-74 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.012G038100 [exp] 226 / 1e-71 AT3G17730 339 / 4e-118 NAC domain containing protein 57 (.1) Potri.004G081000 [exp] 232 / 4e-70 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1) Potri.017G139500 [exp] 231 / 1e-69 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.002G061300 [exp] 204 / 4e-60 AT1G34190 432 / 3e-145 NAC domain containing protein 17 (.1) Potri.012G007500 [exp] 198 / 5e-58 AT5G24590 306 / 4e-98 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030978 [exp] 341 / 5e-116 AT4G17980 273 / 6e-91 NAC domain containing protein 71 (.1) Lus10035373 [exp] 335 / 1e-113 AT4G17980 280 / 2e-93 NAC domain containing protein 71 (.1) Lus10042284 [exp] 238 / 3e-76 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 237 / 6e-76 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10007377 [exp] 234 / 7e-71 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10020794 [exp] 234 / 1e-69 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10010959 [exp] 226 / 2e-68 AT1G65910 389 / 9e-128 NAC domain containing protein 28 (.1) Lus10017915 [exp] 188 / 5e-57 AT1G71930 314 / 4e-107 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Lus10010148 [exp] 193 / 2e-56 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3) Lus10032919 [exp] 189 / 7e-55 AT5G24590 314 / 7e-102 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.003G089800.3 pacid=42785845 polypeptide=Potri.003G089800.3.p locus=Potri.003G089800 ID=Potri.003G089800.3.v4.1 annot-version=v4.1 ATGGGAGGGGCTTCATTGCCACCGGGATTTCGTTTTCATCCAACTGATGAGGAATTGGTAGGGTATTACCTGCATAGGAAAGTTGAAGGGCTTGAAATTG AGCTTGAAGTGATCCCCGTGATCGATTTGTACAAATTCGATCCATGGGAGTTGCCAGAGAAGTCATTCCTGCCGAAACGAGATATGGAATGGTTCTTCTT CTGTCCCAGGGATCGTAAGTATCCAAATGGTTCGAGAACAAATAGAGCCACTCAAGCTGGCTACTGGAAGGCTACTGGCAAAGACCGGAAAGTTGTCTGT CAATCTGCCGTGACTGGGTATAGAAAGACTCTCGTTTTCTATCGCGGACGGGCTCCTTTAGGAGACAGGACAGACTGGGTAATGCATGAGTATCGCCTCT GCGATGATCTTTCTCAAGGATCACCCAATTTTAAGGGAGCTTTTGCTTTGTGCCGTGTTGTTAAAAAGAATGAGCAAGGTTTGAAGATGAGTGATCCACA AGGTGAGCCTAAAGCCAAAAAGGTCGGAAGTAGCTCGAGCAATGTGGATTTCACCTCTAATGTAGTCTCGAACGAGCCTTCGAACATCTCATTTGGCATG TCTTCTCAAGCAAGTTACCTGTATAACAATGGGAATCAATATTCAACTCCTATTGCGTCTCCTTATCAAGTCACAACAGTGTCAGAACTTGAGCCAGCTG CTTCATTGGAAAGCAATCCTCCAAGCCATTGGATCTCACCCGAACTAATTCTTGATTCCTCAAAGGACTATCCACATGTACATGAAGCTGCATCTCAATA CTTTCCACAGTATGAGTATCCAAGCTCCATGAATACATGGCAGCCAGACACACACGGAGAATTCTCGCCGGGTTCATCATACTCGAATTTTACAGGAGAA ATTGAGCATGCCGATGATCTCAGTCACATTGGGTTCATGTCACCTTACTCAGAACATGGAAACTACATGGGTTTTGGTGGGAATGATGACATGCACTATC AAGGATCAGAGCGTTGGAACAAAGCTCCAATTTGCAGGCAAGCAAGTGGAGATGGGAGTTTGGGGGAATATGGCGGTCTTTGGTCGCAGGAAGACAACAT GGTGATTGTGATCTAG
AA sequence Show only first row Show all	>Potri.003G089800.3 pacid=42785845 polypeptide=Potri.003G089800.3.p locus=Potri.003G089800 ID=Potri.003G089800.3.v4.1 annot-version=v4.1 MGGASLPPGFRFHPTDEELVGYYLHRKVEGLEIELEVIPVIDLYKFDPWELPEKSFLPKRDMEWFFFCPRDRKYPNGSRTNRATQAGYWKATGKDRKVVC QSAVTGYRKTLVFYRGRAPLGDRTDWVMHEYRLCDDLSQGSPNFKGAFALCRVVKKNEQGLKMSDPQGEPKAKKVGSSSSNVDFTSNVVSNEPSNISFGM SSQASYLYNNGNQYSTPIASPYQVTTVSELEPAASLESNPPSHWISPELILDSSKDYPHVHEAASQYFPQYEYPSSMNTWQPDTHGEFSPGSSYSNFTGE IEHADDLSHIGFMSPYSEHGNYMGFGGNDDMHYQGSERWNKAPICRQASGDGSLGEYGGLWSQEDNMVIVI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Potri.003G089800 [exp]	0	1
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.007G111200 [exp]	2.00	0.9139
AT3G22142			Bifunctional inhibitor/lipid-t...		Potri.006G008300 [exp]	2.44	0.8958
AT5G25810	AP2_ERF	TNY, TINY	TINY, Integrase-type DNA-bindi...		Potri.001G187500 [exp]	3.60	0.9191
AT4G14860	OFP	ATOFP11	ovate family protein 11 (.1)		Potri.005G211300 [exp]	13.03	0.8580
					Potri.005G189000 [exp]	16.09	0.8767
AT5G64700			nodulin MtN21 /EamA-like trans...		Potri.019G004100 [exp]	16.85	0.8880
AT2G37530			unknown protein		Potri.006G083800 [exp]	18.65	0.8660
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.004G215100 [exp]	18.97	0.8770
					Potri.010G223733 [exp]	21.90	0.8497
AT3G23290		LSH4	LIGHT SENSITIVE HYPOCOTYLS 4, ...		Potri.011G156600 [exp]	23.91	0.8632

Compare expression of checked genes

Potri.003G089800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.