Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35330 726 / 0 RING/U-box superfamily protein (.1.2) AT1G32530 627 / 0 RING/U-box superfamily protein (.1) AT4G03000 192 / 1e-51 RING/U-box superfamily protein (.1.2) AT1G03365 187 / 6e-50 RING/U-box superfamily protein (.1) AT1G73950 56 / 6e-08 Transmembrane Fragile-X-F-associated protein (.1) AT1G18470 55 / 1e-07 Transmembrane Fragile-X-F-associated protein (.1.2) AT1G68820 54 / 3e-07 Transmembrane Fragile-X-F-associated protein (.1) AT1G63900 47 / 4e-05 DAL1 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) AT5G23110 45 / 0.0002 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT5G03200 44 / 0.0002 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G144200 [exp] 1098 / 0 AT2G35330 780 / 0.0 RING/U-box superfamily protein (.1.2) Potri.008G198300 [exp] 282 / 4e-83 AT4G03000 338 / 8e-103 RING/U-box superfamily protein (.1.2) Potri.010G027900 [exp] 275 / 3e-80 AT4G03000 453 / 2e-146 RING/U-box superfamily protein (.1.2) Potri.008G116400 [exp] 54 / 2e-07 AT1G68820 667 / 0.0 Transmembrane Fragile-X-F-associated protein (.1) Potri.015G050300 [exp] 54 / 2e-07 AT1G18470 748 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Potri.014G138000 [exp] 54 / 3e-07 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Potri.012G060100 [exp] 51 / 3e-06 AT1G18470 673 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Potri.001G074800 [exp] 47 / 6e-05 AT1G30860 179 / 1e-46 RING/U-box superfamily protein (.1) Potri.005G093000 [exp] 46 / 0.0001 AT5G23110 5932 / 0.0 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000899 [exp] 523 / 0 AT2G35330 463 / 2e-158 RING/U-box superfamily protein (.1.2) Lus10004557 [exp] 523 / 0 AT2G35330 473 / 2e-162 RING/U-box superfamily protein (.1.2) Lus10041246 [exp] 276 / 7e-81 AT4G03000 491 / 5e-161 RING/U-box superfamily protein (.1.2) Lus10021954 [exp] 267 / 2e-77 AT4G03000 485 / 1e-158 RING/U-box superfamily protein (.1.2) Lus10041245 [exp] 261 / 3e-75 AT4G03000 465 / 4e-151 RING/U-box superfamily protein (.1.2) Lus10041244 [exp] 254 / 1e-72 AT4G03000 492 / 3e-161 RING/U-box superfamily protein (.1.2) Lus10021953 [exp] 99 / 2e-21 AT4G03000 177 / 1e-47 RING/U-box superfamily protein (.1.2) Lus10042969 [exp] 57 / 4e-08 AT1G18470 698 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10032471 [exp] 57 / 4e-08 AT1G18470 701 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10027994 [exp] 50 / 3e-06 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.003G090000.3 pacid=42784772 polypeptide=Potri.003G090000.3.p locus=Potri.003G090000 ID=Potri.003G090000.3.v4.1 annot-version=v4.1 ATGGGTTGCACTGCAAGAGAGAAACATGTCCGTGCTAATCGGAGGGTTCCCCGTCCTGCCAATTACACTGAATTCGATCCCTGTGTTTATGCCAAAACCC TTCTTGAATCGGGTCTCAAACCCTTAGCTTACCATCTGGGCCTTCACGATCCAACCCATAGCAACAACGACAATAACTCCAATTCTAATTTTGATGATAA CGGATGGGGTTATTGTACTGAGGAACAATTGGAAGAGATTCTTTTAAAAAATCTTGAATTCTTGTACAAAGAAGCCATTTCTAAGCTTGTTGGATTAGGT TATGATGAGGATGTTGCGTTAAAGGCCATTTTGCGCAATGGGCATTGTTATGGTGGCATGGATGTGCTAACTAATATATTGCACAATTCATTGGCCTTTT TGAATAATAATAATAATAATAATAATTGTGGTGGTGGTGGTGGTGGTAGTACCGGAAATGCAGATGAAACTGAGCTTGTTTTTGATGATTTAAGGCAACT AGAGGAGTATTCTCTTGCGGGTTTGGTTTGTTTGTTGCAACAAGTTAAGCCACATTTGAGTAAAGGTGATGCTATGTGGTGTTTGTTGATGAGTGATCTT CATGTGGGTAGAGCAAGTGCGCTTGAAATTCCTATTGCGAGTTTGCCAGGGAATGGGAGTGGTAATGTTCAGACTAATGTAGAGAGTGTTGGTGGGGATG ATAATGGTAATGGGATTGGTGTTGTGGCCCCGGCTTTGTGTAGGTTTCATGGAGGATGGGGATTTGGAAGTGGGGGAGGATCTGAGTTTTCAGTTAATGG GCTTTTCTCTTATAGTGCAGAAATGTCTTTGCATAAGGATATTGAGTGTCCTAAAAGGTTTAATCTATCGCCTTCAATGAAGTCTTTATTGAAGAGGAAT GTTGCAATTTTTGCTGCTGGTTTTAGGGCTAATTCAAAACAGATGCAGATGCAACCTCAGTTGCAATCTCAGGCTTGTATGAGTGTTACTGCAGGTGGGG ATGCTGCCCCAGTTGTAAAGGCAAATGAAGGTATGGTCGAGAAGGGTGAGGAGTCTCAGAATTTGAAGAACGAAGATGGAGTTAGTTTGATGCTGAGCAA GCTTCAGAATTTGAAGCTTGATGAGAATTTGGAGATTGTAGGAGAAGATCAGAAGGATGAGATGATGGTAACCCTGCTTCAACAGATAAAGGATCTTGAG AAACAATTGAAGGAGCGGAAGGAGTGGGCACATCAGAAGGCAATGCAAGCTGCCAGAAAGCTTAGTAGTGATTTAACAGAACTTAAAATGTTGAGGATGG AAAGGGAGGAGACCCAGCGATTAAAGAAGGGGAAACAGACTCTGGAGGACTCTACCATGAAGAGGCTGTCTGAGATGGAGAATGCTTTAAGGAAGGCTAG CAGTCAAGTGGACAGGGCAAATGCAGCTGTGAGACGGCTGGAGACAGAGAATGCTGAAATCAGGGCAGAGATGGAAGCTTCTAAGTTAAGCGCATCAGAG TCAGTAACAACATGTTTGGAGGTAGCAAAGAGGGAGAAAAAGTGCCTGAAGAGGCTTTTGGCTTGGGAGAAACAGAAAACTAAGCTGCAGGCTGAGATTG CAGATGAGAAAGAGAAGATCAAGGAGTTGCAGCGATGTTTGGGCAAAATTGAGCAGGCTCAGAAGGAAGCTGAGGTGAAGTGGAGGCAGGAGATGAAGGC CAAAGAGCAAGCTTTGACCTTAGTGGAAGAGGAAAGATGCGCCAAGGAAGCTGCTGAGGCTGAAAATAAAAGGAAGCTTGAGGCTTTGCGCCTAAAGATA GAGATTGACTTCCAGCGCCACAAGGATGATCTCCAAAGACTTGAACAAGAGTTTTCACGCCTGAAATCTGCTGCAGAGTCCACTGAGTTGAATAATCAGT CAAATGCTTTACCCTCGGGAAAGTCTGAGAGGGCAAAGCCCCAAGGAGAAACAATTGCTAGGTTGCTTCATGAATTAGATAAACTGGAAAATTCGTCTGA GAAAGGAGCCAACTGTGACAGGGAATGCATGATTTGTCTAAAAGATGAAGTCTCTGTTGTTTTTCTCCCTTGTGCTCACCAAGTTATATGTGCAAGTTGC AGTGATAATTACGGGAAGAAGGGGAAAGCTACTTGTCCGTGCTGCCGGGTTCCAATTGAACAGAGAATCCGTGTTTTTGGTGCGAGTTCATAG
AA sequence Show only first row Show all	>Potri.003G090000.3 pacid=42784772 polypeptide=Potri.003G090000.3.p locus=Potri.003G090000 ID=Potri.003G090000.3.v4.1 annot-version=v4.1 MGCTAREKHVRANRRVPRPANYTEFDPCVYAKTLLESGLKPLAYHLGLHDPTHSNNDNNSNSNFDDNGWGYCTEEQLEEILLKNLEFLYKEAISKLVGLG YDEDVALKAILRNGHCYGGMDVLTNILHNSLAFLNNNNNNNNCGGGGGGSTGNADETELVFDDLRQLEEYSLAGLVCLLQQVKPHLSKGDAMWCLLMSDL HVGRASALEIPIASLPGNGSGNVQTNVESVGGDDNGNGIGVVAPALCRFHGGWGFGSGGGSEFSVNGLFSYSAEMSLHKDIECPKRFNLSPSMKSLLKRN VAIFAAGFRANSKQMQMQPQLQSQACMSVTAGGDAAPVVKANEGMVEKGEESQNLKNEDGVSLMLSKLQNLKLDENLEIVGEDQKDEMMVTLLQQIKDLE KQLKERKEWAHQKAMQAARKLSSDLTELKMLRMEREETQRLKKGKQTLEDSTMKRLSEMENALRKASSQVDRANAAVRRLETENAEIRAEMEASKLSASE SVTTCLEVAKREKKCLKRLLAWEKQKTKLQAEIADEKEKIKELQRCLGKIEQAQKEAEVKWRQEMKAKEQALTLVEEERCAKEAAEAENKRKLEALRLKI EIDFQRHKDDLQRLEQEFSRLKSAAESTELNNQSNALPSGKSERAKPQGETIARLLHELDKLENSSEKGANCDRECMICLKDEVSVVFLPCAHQVICASC SDNYGKKGKATCPCCRVPIEQRIRVFGASS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35330			RING/U-box superfamily protein...		Potri.003G090000 [exp]	0	1
AT2G27950			Ring/U-Box superfamily protein...		Potri.009G003500 [exp]	4.69	0.7642
AT5G11700			unknown protein		Potri.006G234500 [exp]	7.00	0.7906
					Potri.002G055950 [exp]	21.90	0.6962
AT1G49310			unknown protein		Potri.009G114400 [exp]	22.36	0.7285
AT3G03440			ARM repeat superfamily protein...		Potri.017G128100 [exp]	23.23	0.7297
AT2G39260			binding;RNA binding (.1)		Potri.010G216100 [exp]	24.00	0.7320
AT4G13460		SET22, SDG22, S...	SETDOMAIN GROUP 22, SU(VAR)3-9...		Potri.008G173100 [exp]	27.92	0.7606
AT5G25060			RNA recognition motif (RRM)-co...		Potri.018G017200 [exp]	28.77	0.7397
AT1G12760			Zinc finger, C3HC4 type (RING ...		Potri.003G123300 [exp]	29.29	0.6929
AT1G31050	bHLH	bHLH111	basic helix-loop-helix (bHLH) ...		Potri.008G142700 [exp]	29.93	0.7093

Compare expression of checked genes

Potri.003G090000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.