Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17440 415 / 2e-140 PIRL5 plant intracellular ras group-related LRR 5 (.1) AT4G35470 368 / 1e-121 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT5G05850 175 / 2e-48 PIRL1 plant intracellular ras group-related LRR 1 (.1) AT3G11330 175 / 2e-48 PIRL9 plant intracellular ras group-related LRR 9 (.1) AT1G12970 165 / 3e-45 PIRL3 plant intracellular ras group-related LRR 3 (.1) AT3G26500 164 / 6e-45 PIRL2 plant intracellular ras group-related LRR 2 (.1) AT4G29880 145 / 9e-39 PIRL7 plant intracellular ras group-related LRR 7 (.1) AT4G26050 142 / 2e-37 PIRL8 plant intracellular ras group-related LRR 8 (.1) AT2G19330 135 / 7e-35 PIRL6 plant intracellular ras group-related LRR 6 (.1) AT3G15410 114 / 1e-26 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G144100 [exp] 820 / 0 AT4G35470 448 / 6e-153 plant intracellular ras group-related LRR 4 (.1) Potri.005G098600 [exp] 400 / 6e-134 AT4G35470 672 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.007G065000 [exp] 397 / 1e-132 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.015G083800 [exp] 171 / 4e-47 AT3G11330 471 / 9e-163 plant intracellular ras group-related LRR 9 (.1) Potri.010G046500 [exp] 167 / 4e-46 AT1G12970 493 / 7e-173 plant intracellular ras group-related LRR 3 (.1) Potri.012G085600 [exp] 162 / 6e-44 AT3G11330 427 / 8e-146 plant intracellular ras group-related LRR 9 (.1) Potri.018G139700 [exp] 140 / 7e-37 AT2G19330 406 / 2e-141 plant intracellular ras group-related LRR 6 (.1) Potri.006G072700 [exp] 137 / 5e-36 AT2G19330 416 / 4e-145 plant intracellular ras group-related LRR 6 (.1) Potri.004G088500 [exp] 120 / 2e-28 AT1G69550 647 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000900 [exp] 613 / 0 AT4G35470 409 / 2e-138 plant intracellular ras group-related LRR 4 (.1) Lus10035976 [exp] 409 / 1e-137 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10016684 [exp] 384 / 7e-121 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10004559 [exp] 311 / 5e-104 AT4G35470 274 / 1e-89 plant intracellular ras group-related LRR 4 (.1) Lus10004558 [exp] 187 / 6e-56 AT4G35470 92 / 3e-21 plant intracellular ras group-related LRR 4 (.1) Lus10013689 [exp] 181 / 2e-51 AT3G11330 473 / 3e-165 plant intracellular ras group-related LRR 9 (.1) Lus10017948 [exp] 181 / 2e-50 AT3G11330 557 / 0.0 plant intracellular ras group-related LRR 9 (.1) Lus10003229 [exp] 131 / 1e-33 AT2G19330 408 / 4e-142 plant intracellular ras group-related LRR 6 (.1) Lus10021635 [exp] 102 / 2e-24 AT5G07910 360 / 6e-127 Leucine-rich repeat (LRR) family protein (.1) Lus10000681 [exp] 100 / 2e-23 AT5G07910 357 / 2e-125 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.003G090100.1 pacid=42785072 polypeptide=Potri.003G090100.1.p locus=Potri.003G090100 ID=Potri.003G090100.1.v4.1 annot-version=v4.1 ATGGCTGTGAAAACCAGCAAAGATCAAGACCCTTCACCTGCTCTTTTAGATGCAGTGGAAGAAATCATGAGACTCTACAAATCACTACCGTCAAGACCCT CCATCGAAGAAGTTGAAGCAGCCATTTCTGTGATCAAGACTGTCAACAATGAAGAGCAGGCAAAGCTTGATGATATTTCAGACCAGGAATGTCCTCAAGA TGTCCCACGGGAGCTCTTCTCCGTGCTACAACAAGCGAGAAAGACCGCGTTGTTGTTTAAAAGCCATGAACAGAGAAAAGAGGCTCTTCAATTGGTTGAA GTTGACAAGATGTTCGAGACCTTTGATGGGTTGATTCAAAAATCTTCTCTGTTGGTTTCCGGTGGTACTCAGAAGGAGAAACTGGTTTCTATCAGTGAGT CAGTTGAGGAAATTGAGAAAGAAAGTGTGGTTAGTGATGAAAGTTTGATCAAGAAGAGAGAAGATGGAGAATCGAAGAAAGATAGCTTCAAGGGTTTGGC GAAGAGCTCTTCCTCGAAAGCTACTTTCTTTTCAGGTGAAGTGGGCACTGAGAAATTAAGTCTAATGAAGGTGGCAGCGATCATAGAAAATTCTGCAAAA ACTGGAGCTGTAGTTCTTGATCTTAGAGGCAAGTTGATGGATAAAGTTGAGTGGCTCCCTCTGTCAATTGGGAAATTATCAGTTATTACCGAATTGGACT TATCCGAAAACCAAATTATGGCACTTCCATCCACCATTAATAACCTCAAAGCCTTGACAAAGTTGGATGTCCACTCAAACCAACTAATAAACCTTCCTGA GTCATTTGGGGAGCTAATCAATCTCACCGATCTCGATCTCCATGCAAACAGGTTAAGATTATTGCCAGCTTCTTTTGGGAAGTTGACAAACCTTGAGAAT CTTGATTTGGGTTCAAATCAGTTCACTCAGTTGCCAGAGACTATTGGGAGTTTGACCAGCTTGAAGAAATTGAACGTGGAAACAAATGAACTTGAGGAGC TTCCACACACAATTGGAAGTTGCACGTCACTAGTGGAGCTGAGATTAGATTTCAATCAGCTCAGAGCTCTTCCCGAGGCAATTGGAAAGCTGGCTTGTTT GGAGATTCTTACTTTGCACTATAACAGAATTAGAGGGTTACCAACAACGATGGGCCATCTTTCCAATTTGAGGGAACTTGTTGTAAGCTTCAATGAACTA GAATTCATACCTGAAAACCTGTGTTTTGCAGAAAATCTCAGGAAATTGAATGTTGCAAATAACTTCGCGGATCTAAGAGCATTGCCACGAAATATCGGAA ACCTTGAATTGCTCGAGGAGTTGGATATAAGTGATGATCAGATCAGAGTCTTGCCAGATTCTTTTAGGCTCTTGTTAAAATTGGTAGTTTTTCGTGCTGA CGAAACTCCTCTGGAAGTTCCACCAAGACAAGTAACTACATTGGGCGCTCAGGCTGTTGTTCAGTTCATGGCTACACTTGTTAACAAGAGAGACACAAAC CCTCAATTGTCAAAGAAGAAGAAGGGTTTTTGGCACAGGGTCTGCCTAATCTTTTGGCCTTGCCGGAGCAACTAA
AA sequence Show only first row Show all	>Potri.003G090100.1 pacid=42785072 polypeptide=Potri.003G090100.1.p locus=Potri.003G090100 ID=Potri.003G090100.1.v4.1 annot-version=v4.1 MAVKTSKDQDPSPALLDAVEEIMRLYKSLPSRPSIEEVEAAISVIKTVNNEEQAKLDDISDQECPQDVPRELFSVLQQARKTALLFKSHEQRKEALQLVE VDKMFETFDGLIQKSSLLVSGGTQKEKLVSISESVEEIEKESVVSDESLIKKREDGESKKDSFKGLAKSSSSKATFFSGEVGTEKLSLMKVAAIIENSAK TGAVVLDLRGKLMDKVEWLPLSIGKLSVITELDLSENQIMALPSTINNLKALTKLDVHSNQLINLPESFGELINLTDLDLHANRLRLLPASFGKLTNLEN LDLGSNQFTQLPETIGSLTSLKKLNVETNELEELPHTIGSCTSLVELRLDFNQLRALPEAIGKLACLEILTLHYNRIRGLPTTMGHLSNLRELVVSFNEL EFIPENLCFAENLRKLNVANNFADLRALPRNIGNLELLEELDISDDQIRVLPDSFRLLLKLVVFRADETPLEVPPRQVTTLGAQAVVQFMATLVNKRDTN PQLSKKKKGFWHRVCLIFWPCRSN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17440		PIRL5	plant intracellular ras group-...		Potri.003G090100 [exp]	0	1
AT2G47710			Adenine nucleotide alpha hydro...		Potri.002G205275 [exp]	2.00	0.8874
AT5G61530			small G protein family protein...		Potri.004G233400 [exp]	3.46	0.8760
AT3G60380			unknown protein		Potri.002G136600 [exp]	4.47	0.8529
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Potri.001G225400 [exp]	4.69	0.8512
AT3G19553			Amino acid permease family pro...		Potri.001G296100 [exp]	5.47	0.8854
AT1G64280		SAI1, NIM1, NPR...	SALICYLIC ACID INSENSITIVE 1, ...		Potri.006G148100 [exp]	9.53	0.8574	NPR1.1
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.017G048900 [exp]	9.89	0.8459
AT2G47710			Adenine nucleotide alpha hydro...		Potri.002G193800 [exp]	13.41	0.8130
AT3G07870			F-box and associated interacti...		Potri.014G162600 [exp]	14.07	0.8306
AT3G51000			alpha/beta-Hydrolases superfam...		Potri.007G018900 [exp]	14.49	0.8666

Compare expression of checked genes

Potri.003G090100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.