Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02890 178 / 3e-45 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G16680 164 / 1e-40 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G43770 93 / 2e-19 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT4G17850 76 / 2e-15 unknown protein AT5G61110 51 / 4e-07 zinc ion binding (.1) AT5G61100 51 / 1e-06 unknown protein AT5G24330 50 / 4e-06 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT5G61120 49 / 1e-05 unknown protein AT5G61090 49 / 2e-05 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G01460 49 / 3e-05 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G077900 [exp] 179 / 3e-45 AT5G16680 536 / 1e-165 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.019G041900 [exp] 178 / 6e-45 AT5G16680 288 / 6e-79 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.005G173200 [exp] 80 / 3e-15 AT1G43770 187 / 2e-54 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.007G110400 [exp] 77 / 2e-14 AT1G43770 135 / 1e-35 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.005G189400 [exp] 77 / 4e-14 AT1G43770 142 / 1e-37 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.014G040100 [exp] 65 / 2e-10 AT5G61120 127 / 1e-31 unknown protein Potri.017G072460 [exp] 48 / 4e-05 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.003G126600 [exp] 47 / 0.0001 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.012G018300 [exp] 45 / 0.0002 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020350 [exp] 160 / 2e-39 AT3G02890 439 / 2e-131 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10009530 [exp] 159 / 6e-39 AT5G16680 395 / 5e-115 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028603 [exp] 66 / 2e-10 AT1G43770 106 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10035396 [exp] 61 / 2e-09 AT5G61120 76 / 4e-15 unknown protein Lus10030998 [exp] 57 / 5e-08 AT5G61120 71 / 1e-13 unknown protein Lus10008796 [exp] 49 / 3e-05 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10008495 [exp] 45 / 0.0004 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10028655 [exp] 44 / 0.0007 AT1G77250 259 / 1e-79 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10042764 [exp] 44 / 0.0008 AT1G77250 301 / 1e-95 RING/FYVE/PHD-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G091000.2 pacid=42787448 polypeptide=Potri.003G091000.2.p locus=Potri.003G091000 ID=Potri.003G091000.2.v4.1 annot-version=v4.1 ATGGGATCCTCTGTCACAGAAAATATGTTCGGTAGCAAACAGTATTCAAGTGATAAATTTCACATCAAAGAAGAATCTGGGACGTGTAACGAGTGCACAG GCTCATGCTCATGTTGTATGGCGGCATCACTGCTGAGAATGAAGGCCGATGTTGGGTTTTCATATGAAATCTCCAAGGGAAAAGTAGATGCTCAATACTC TCGCAGTGGTGCTGATATGCTATCCCCCGTAGATAGTTCATGCAATAGTAGAAATCGTTCCACCAGCGAGATTAGCAACCTTCTAAGTGCATGCTCAAGT CATGATTCATTCTCTGAAAATGAAGAAAGTAAAGACACTTTGAGAGCATCTGGTACTTCTGAACACTCTGAGATGCTAGTAGAAGAAAATGATCAGCAGA CTGCTCGGAAAAATCCTGGTTTATCCAGAACAATACTATTTCATGATAGTAATATTTTGTTTAAAAATCATCAGAAGCCAAAAGAATTGGAATGCATTGG TGATGATGCCTCTTGTATTAGTGGTTCAGAGTACACAGACAAGATTGCTGGTGATCATCATTGCTATACAGATAGGAAGAATGTATCGTCTAGTTCAACC TCAATTGACAGTTTTCCTGCAATTGAGAATGCTGCTAATGTTCGACCTACTCTCTGTTCTTTAGCTAAAGGTCAATTTGATACAATAGACAATAATCAGC CTAGAACCTTAATTAAGTTTACCAAAGAATCTTCACCGACAATTGCAGTTTTTTCAAATAAATCTAACCAAATAGATATTTCTTCAGCTAGAGATTTCTA TATTGGGGCCAACTCATCAAAGGGAAAACCATCTGAGTGCTCTGAAGAGCAAATAGAATCACCACTGATGAGAGCAGCAACCTTTTGGGTTGATGCTCAG ATACATGAAGAAGAGAACCACACAGAACCTGTGAAATCTGAGATTGGAAGGAAAGATGGAGAAGCTGCGGTTGCAAAATGTTCAGATCAGAAGGGAGATG AACCTGCTAAATGGCAACCCACTCCAAAGGCTCAGCCCATGGTCCATGATGGTGAACTGGACCACATACAAGATGAGGTAAAAGTCTGTGATATCTGTGG GGATGTGGGTCAGGAGGAGAAGCTTGCTACATGTAGCAAGTGCAGTGATGGAGCAGAACACATATATTGCATGCGTGAAAAGCTGGAGAAAGTTCCTGAA GGAAATTGGATGTGTGAAGACTGCATGCTTGGGGATGAAAATAAAAGACAAAAGAAAAATAACTTTGAAAAAGAAGAGGCAGTTCAATTAGAGAAATCAT CACTGAATGAGATAATAAAGAACTCCAAAAATTCAGGTGCTTTCAGCTGTAATATTAGTTTGGAATCAAATACTAAAGGGATGGGTGTTGATAAGAACAG AAGAAATGATAGTTCTTCCTGTCACTTCCCTGCTAAGAGACCAGCGGATGATTCAGAAACCTTCACTGCAAAAAGAATGGCCCTTGAAGAAGGTCACAAC TCATCTATGCTATCCAAAGAATCCTATCCTTGCAGCAAAGTGGAAATTTGTCGGGGTTCTTCCCTCAAGAACATTGATACGAGGAAAATGAAACCAGCCT ATGAAGGTTCTCTTTCAAAATCAAAATCACCTCTTGATATAAGTTCAAAAGTTGAACTCCAACAGTCAGAGGGTGGTGTCAACAAGCAAAATTTGGGGAG AGTAACTGCTACCTGTGGCAATAAGGAGGGGGTTGGCAGGATACCATGCAAATCTACATCATTCAAGAAAGCTAGCTCAGACCATGTAAATGCTGCTGAC TCCAAGGTTAAAAAGATCTCTTCTAATTTGGCCCATGTAGAAGAAATGAAAAGACTAAGACATGTAAAAGGGCAAAATTTGGCTGTATCAGAAACTACAT TCCATAAATCATTGAAGAAATCACCAGTTGCCGATAATCATGCTTCTGCATCAATGAGGGATGAGAGAACCCCGCATGGAGGGGAAGCTAGCGTACTGCC TTTGTCTACGCCCAGACATCATGATATGACGGCTGTCCAAGGTGATGGAAAATCAAGTAGCTCATTAACATCCATCAGGGATGTTGCTCTTAGAAACTTT CCAAATGAAGAACAAAAAAGGCTTCTCAATGATGCATCAAATGACGAAGCATTTGCCGCCAGATCAAATCAAAATAATTTGATCTCCATCCACCCTTCCA ATGAACCATCTTATCTGAAAGGATTGACCTGGTTACCTTCTGCAGTGGATATTCCTTCTTGGGTTTCTGTTGTCCCACAGCTTGAGTGCATATGGCAAGG TGGATTTGGAATTCAGAGAAGTGGAGTGTTTATTAGTTCTTGCGATGGCATTCAAGCACATGCATCAAGTTGTGCTTCACCTAAAGTTCATGAAATAGTG TGTAAATTTCCCCAGAAAATTCTAGCAGAGCAAGCATCCTCCTTGGTTATGTGGCCAACTCAGCCCCCAGAAAGCGAGGCCAAAGAAGAAAACATTGCAC TCTACTTTTTTGCCAAGGATTTGGAGAGCTATGAAAGTAACTACAAGATCCTGATGGAATACATGACTAAGAACAACTTGGGTCTAAAAGCAAACATTGA TGGACTTGATCTGCTAATATTCTCATCTAAGCTGCTTCCAAAAAGATCCCAGCGTTGGAATCAAATGCTGTTTTTATGGGGTGTATTTAGAGGGAGGAAG ATAAATTGCTCACAGGAAACTCCAAATCCTCAAAGGAATTGTTTTTCCGAGTTGAATGTGGCACATTCTGGTTTGCAGAACCTGCATTCCTCTGCTCATG CGAGTGGAATTATGTCTCCCTCAAATATTTTTAACAATATTCAACAAACATCAGACTCTGTTACCTCATTCGAAGTGCCTACTCTTGCTAGAATGGGCGA GAGCTGCGAAAACAAGGTTTCTTCTCCACTTAAGAAGCTTTTAGTTTTTCAAATTTCTGACAAATGGCTGAGTTCTGATGGCACTTCAATGAAGAGTGAA CGGTTGTCTAGGAATGTGAAAAACAATGACCCTTCTCAGGGGCAAGAAAAGGAAAAAGAGAAAGGAAAACAAATTGATCCAAATAGAGAGAGTGATATAG AAATGGTAACAGTCGATGAAGAATGCGAGGGCAAAAGGATAAAAAAATTCAATGGAATGTTGGAACATAATACTTCTGGTGACTTCCAGTTTTTGGGTGA TAGATTGCCATCTGGGGTAATCGATCTTAGTCCTGTTTATATGAAGTCTGTGCAGTGTCAAGAAGGTCCCATGAATGGTGAGAATCCTTTGGAATCTGGA AATCTAAACCTTGAACTTTCCTTGGGATTTGGGAAATCACGCGATCATGGGGCTGTTTCCCTGCTTCCAAATGTCGGGCATAATAGAAGCAAGGACACTA AGGATTCCAATGAAGTAACGAGCAACAAAAATAACGAATGTTCGACGTCTCTCACTCTTTCTCTGGCCTCGGCTACCTCCATCGAAGAGAAGGAAGCGAA GCAGGTTATGGAACCACAGCTGTTGTTTCCTACCATGGATGCTTCACTGTTTCTTTCACTGTAA
AA sequence Show only first row Show all	>Potri.003G091000.2 pacid=42787448 polypeptide=Potri.003G091000.2.p locus=Potri.003G091000 ID=Potri.003G091000.2.v4.1 annot-version=v4.1 MGSSVTENMFGSKQYSSDKFHIKEESGTCNECTGSCSCCMAASLLRMKADVGFSYEISKGKVDAQYSRSGADMLSPVDSSCNSRNRSTSEISNLLSACSS HDSFSENEESKDTLRASGTSEHSEMLVEENDQQTARKNPGLSRTILFHDSNILFKNHQKPKELECIGDDASCISGSEYTDKIAGDHHCYTDRKNVSSSST SIDSFPAIENAANVRPTLCSLAKGQFDTIDNNQPRTLIKFTKESSPTIAVFSNKSNQIDISSARDFYIGANSSKGKPSECSEEQIESPLMRAATFWVDAQ IHEEENHTEPVKSEIGRKDGEAAVAKCSDQKGDEPAKWQPTPKAQPMVHDGELDHIQDEVKVCDICGDVGQEEKLATCSKCSDGAEHIYCMREKLEKVPE GNWMCEDCMLGDENKRQKKNNFEKEEAVQLEKSSLNEIIKNSKNSGAFSCNISLESNTKGMGVDKNRRNDSSSCHFPAKRPADDSETFTAKRMALEEGHN SSMLSKESYPCSKVEICRGSSLKNIDTRKMKPAYEGSLSKSKSPLDISSKVELQQSEGGVNKQNLGRVTATCGNKEGVGRIPCKSTSFKKASSDHVNAAD SKVKKISSNLAHVEEMKRLRHVKGQNLAVSETTFHKSLKKSPVADNHASASMRDERTPHGGEASVLPLSTPRHHDMTAVQGDGKSSSSLTSIRDVALRNF PNEEQKRLLNDASNDEAFAARSNQNNLISIHPSNEPSYLKGLTWLPSAVDIPSWVSVVPQLECIWQGGFGIQRSGVFISSCDGIQAHASSCASPKVHEIV CKFPQKILAEQASSLVMWPTQPPESEAKEENIALYFFAKDLESYESNYKILMEYMTKNNLGLKANIDGLDLLIFSSKLLPKRSQRWNQMLFLWGVFRGRK INCSQETPNPQRNCFSELNVAHSGLQNLHSSAHASGIMSPSNIFNNIQQTSDSVTSFEVPTLARMGESCENKVSSPLKKLLVFQISDKWLSSDGTSMKSE RLSRNVKNNDPSQGQEKEKEKGKQIDPNRESDIEMVTVDEECEGKRIKKFNGMLEHNTSGDFQFLGDRLPSGVIDLSPVYMKSVQCQEGPMNGENPLESG NLNLELSLGFGKSRDHGAVSLLPNVGHNRSKDTKDSNEVTSNKNNECSTSLTLSLASATSIEEKEAKQVMEPQLLFPTMDASLFLSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02890			RING/FYVE/PHD zinc finger supe...		Potri.003G091000 [exp]	0	1
AT1G05840			Eukaryotic aspartyl protease f...		Potri.014G146400 [exp]	1.41	0.8137
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Potri.001G067300 [exp]	2.00	0.8132
AT5G26760			unknown protein		Potri.015G010900 [exp]	5.00	0.8261
AT4G36988		CPuORF49	conserved peptide upstream ope...		Potri.007G043850 [exp]	6.32	0.8014
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.007G043800 [exp]	7.48	0.7865
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.017G017800 [exp]	8.48	0.8136
AT1G34630			unknown protein		Potri.005G165100 [exp]	8.94	0.7696
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.006G025600 [exp]	9.38	0.7812
AT3G03140			Tudor/PWWP/MBT superfamily pro...		Potri.013G081400 [exp]	10.09	0.7989
AT1G64140			unknown protein		Potri.003G134200 [exp]	16.88	0.7758

Compare expression of checked genes

Potri.003G091000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.