Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17830 734 / 0 Peptidase M20/M25/M40 family protein (.1.2) AT1G44820 45 / 9e-05 Peptidase M20/M25/M40 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G143200 [exp] 846 / 0 AT4G17830 744 / 0.0 Peptidase M20/M25/M40 family protein (.1.2) Potri.002G085400 [exp] 44 / 0.0001 AT1G44820 660 / 0.0 Peptidase M20/M25/M40 family protein (.1) Potri.005G178900 [exp] 44 / 0.0002 AT1G44350 604 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.002G085500 [exp] 43 / 0.0003 AT1G44820 636 / 0.0 Peptidase M20/M25/M40 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040090 [exp] 753 / 0 AT4G17830 740 / 0.0 Peptidase M20/M25/M40 family protein (.1.2) Lus10030957 [exp] 746 / 0 AT4G17830 734 / 0.0 Peptidase M20/M25/M40 family protein (.1.2) Lus10042502 [exp] 53 / 2e-07 AT1G44820 635 / 0.0 Peptidase M20/M25/M40 family protein (.1) Lus10010715 [exp] 51 / 1e-06 AT1G51760 463 / 1e-161 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030828 [exp] 49 / 4e-06 AT1G51760 489 / 6e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030659 [exp] 49 / 5e-06 AT1G51760 489 / 8e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10013848 [exp] 47 / 3e-05 AT4G38220 576 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) Lus10029200 [exp] 43 / 0.0005 AT5G56660 469 / 8e-164 IAA-leucine resistant (ILR)-like 2 (.1) Lus10026565 [exp] 43 / 0.0005 AT4G38220 616 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [poplar] [flax] Peptidase_MH PF01546 [poplar] [flax] Peptidase_M20 Peptidase family M20/M25/M40 CL0035 [poplar] [flax] PF07687 [poplar] [flax] M20_dimer Peptidase dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.003G091100.1 pacid=42786946 polypeptide=Potri.003G091100.1.p locus=Potri.003G091100 ID=Potri.003G091100.1.v4.1 annot-version=v4.1 ATGACCGATATTGAACAAATCCTAGGAGACCTGAACAAGGACTCCTTTGTTTCCCTCTTGAAAAACATCATTGGGGAGTCCAAATATGTCCAGAACAACC CACCAGAGTTGATCCCTGAAGAAGACAGGGTTGTCACACATGTATTGAATTCTCTTCTCCCCTACAGCACCACCACTAGAGGAGGTCCCTTGATTGTGAA TCATGTCTCTTGTTTCCCTAAAAGAGGCAATCTTATTGTGGAGTACCCTGGTACAGAACCAGGAAAGATCTTGTCTTTTGTTGGCATGCACATGGATGTT GTTACTGCTAATCCCAATGATTGGGAGTTTGATCCATTTTCGTTGAGCATTGATGGGGAAAAACTTCGTGGCCGTGGAACCACGGATTGTTTGGGACATG TTGCTCTTGTGACTGAACTGATGAAGAAGTTGGGGGAGACGAAGCTGAAATTGAAGTCAACAGTAGTTGCAGTCTTTATAGCCAATGAGGAGAATTCTTC CATAACAGGGGTCGGTGTGGATGCACTTGTGAAAGATGGTCTGCTCAATAAGCTGAAGGGAGGCCCTCTATTCTGGATTGACACAGCAGATAAACAACCT TGCATTGGTACTGGCGGTATGATTCCTTGGAAACTTCACTTCACCGGGAAACTTTTTCATAGTGGTTTACCACATAAGGCTATAAATCCTTTGGAGCTGG GGATGGAGGCACTTAAAGAGATACAGTCTCGATTTTACGAGGACTTCCCACCCCATAAGGAAGAGCAAGTATATGGATTTGCAACACCATCAACAATGAA GCCAACTCAATGGAGTTATCCAGGAGGTGGGATCAATCAAATTCCTGCTGAGTGTACAATTTCAGGAGATGTCAGGTTAACACCCTTCTATAGTGTCAAA GATGTGATGGACAAACTACAAGAATATGTGGATGAAATAAATGAGAACATTGAGAAGCTTGACACAAGGGGCCCGGTTTCAAAATATGTCCTCCCAGAAG AAAACCTGAGGGGGAGCCTTACTGTGACCTTCAATGAAGCGTCATCTGGAGTTGCCTGTGATCTTAAATCCCGTGGCTTTGAAGTGTTGTGTAAAGCAAC TGAAAAAGTAGTTGGGCATGTAAAGCCTTACTCAATCACAGGGACTTTGCCACTAATTCGAGAGCTGAAAGATGAAGGTTTTGATGTTCAAACTACAGGC TACGGTTTAATGGCCACATATCATGCCAAGAATGAGTACTGCCTGCTTTCTGATATGTGCCAAGGCTACCAGATTTTTTCCAGCATCATCAGTCAATTAG AAGCTTGA
AA sequence Show only first row Show all	>Potri.003G091100.1 pacid=42786946 polypeptide=Potri.003G091100.1.p locus=Potri.003G091100 ID=Potri.003G091100.1.v4.1 annot-version=v4.1 MTDIEQILGDLNKDSFVSLLKNIIGESKYVQNNPPELIPEEDRVVTHVLNSLLPYSTTTRGGPLIVNHVSCFPKRGNLIVEYPGTEPGKILSFVGMHMDV VTANPNDWEFDPFSLSIDGEKLRGRGTTDCLGHVALVTELMKKLGETKLKLKSTVVAVFIANEENSSITGVGVDALVKDGLLNKLKGGPLFWIDTADKQP CIGTGGMIPWKLHFTGKLFHSGLPHKAINPLELGMEALKEIQSRFYEDFPPHKEEQVYGFATPSTMKPTQWSYPGGGINQIPAECTISGDVRLTPFYSVK DVMDKLQEYVDEINENIEKLDTRGPVSKYVLPEENLRGSLTVTFNEASSGVACDLKSRGFEVLCKATEKVVGHVKPYSITGTLPLIRELKDEGFDVQTTG YGLMATYHAKNEYCLLSDMCQGYQIFSSIISQLEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17830			Peptidase M20/M25/M40 family p...		Potri.003G091100 [exp]	0	1
AT3G18670			Ankyrin repeat family protein ...		Potri.006G281700 [exp]	3.46	0.9173
AT3G18670			Ankyrin repeat family protein ...		Potri.011G016200 [exp]	3.46	0.9125
AT2G18196			Heavy metal transport/detoxifi...		Potri.011G149500 [exp]	5.47	0.9187
AT1G69970		CLE26	CLAVATA3/ESR-RELATED 26 (.1.2)		Potri.010G039800 [exp]	10.19	0.9027
AT5G63500			Protein of unknown function (D...		Potri.012G100100 [exp]	10.67	0.8410
AT5G53870		AtENODL1	early nodulin-like protein 1 (...		Potri.011G117800 [exp]	14.28	0.8644
AT1G77700			Pathogenesis-related thaumatin...		Potri.005G173900 [exp]	18.16	0.9060
AT1G19530			unknown protein		Potri.005G228600 [exp]	23.36	0.8924
AT5G24318			O-Glycosyl hydrolases family 1...		Potri.012G017800 [exp]	24.18	0.9061
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.005G142100 [exp]	26.00	0.8932	Pt-ARF1.5

Compare expression of checked genes

Potri.003G091100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.