Plant FIBer expression Database

Potri.003G091400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G35290 112 / 7e-33 unknown protein
AT1G72430 41 / 2e-05 SAUR-like auxin-responsive protein family (.1)
AT1G17345 39 / 0.0001 SAUR-like auxin-responsive protein family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G142700
[exp]
224 / 3e-77 AT2G35290 105 / 4e-30 unknown protein
Potri.006G137000
[exp]
41 / 2e-05 AT5G20820 135 / 3e-42 SAUR-like auxin-responsive protein family (.1)
Potri.001G458000
[exp]
39 / 0.0001 AT3G12955 86 / 3e-22 SAUR-like auxin-responsive protein family (.1)
Potri.003G071000
[exp]
39 / 0.0002 AT1G72430 126 / 9e-39 SAUR-like auxin-responsive protein family (.1)
Potri.011G143400
[exp]
38 / 0.0004 AT3G12955 91 / 2e-24 SAUR-like auxin-responsive protein family (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G091400.1 pacid=42785350 polypeptide=Potri.003G091400.1.p locus=Potri.003G091400 ID=Potri.003G091400.1.v4.1 annot-version=v4.1
ATGGATTGCTTGGTCTTGCCTGTATCAATGTTGAGAAAGTGCTACTCGAGGTCACGACTAGGCTATCGGCCATTAACTGAAGATGGGTTCGGCGATTTGG
ACAGTCCGGTGACCGTGGTGGTGGGAAAAGAGAGGAAAGAGTTCTTGGTTGATCCGTTTGTATTAGAAGAGAGCCCCTTTCGGGTTTTGATTGAAACAGT
AAATAAGGACAGAGTTTTCGATGATACGAGTAGATCAAGGGAGGAGAAGAGAGTGATTTTTGTGGATGTGGATGCCATTTTGTTCGAGCACATGTTGTGG
TTGATGTACAATGATTGTTCTTCTTTATTTCAGCTTAATCTCAAGGAAATTATTGACTTCTATGCTCAAGATTGTTAG
AA sequence
>Potri.003G091400.1 pacid=42785350 polypeptide=Potri.003G091400.1.p locus=Potri.003G091400 ID=Potri.003G091400.1.v4.1 annot-version=v4.1
MDCLVLPVSMLRKCYSRSRLGYRPLTEDGFGDLDSPVTVVVGKERKEFLVDPFVLEESPFRVLIETVNKDRVFDDTSRSREEKRVIFVDVDAILFEHMLW
LMYNDCSSLFQLNLKEIIDFYAQDC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G35290 unknown protein Potri.003G091400
[exp]
0 1
AT2G24300 Calmodulin-binding protein (.1... Potri.006G187900
[exp]
12.00 0.8215 CBP60.9
Potri.002G122200
[exp]
15.96 0.8294
AT2G35980 NHL10, YLS9, AT... YELLOW-LEAF-SPECIFIC GENE 9, A... Potri.006G204300
[exp]
20.12 0.8179 B13.1
AT2G41430 LSR1, CID1, ERD... CTC-Interacting Domain 1, dehy... Potri.006G044600
[exp]
28.00 0.7099 ERD15.1
AT5G52020 AP2_ERF Integrase-type DNA-binding sup... Potri.012G134000
[exp]
29.05 0.8158
AT3G25730 AP2_ERF EDF3 ethylene response DNA binding ... Potri.004G220400
[exp]
35.32 0.7994
AT5G54490 PBP1 pinoid-binding protein 1 (.1) Potri.013G151000
[exp]
38.20 0.8065
AT1G13930 unknown protein Potri.008G093200
[exp]
38.20 0.7873
AT2G01060 GARP myb-like HTH transcriptional r... Potri.006G101000
[exp]
46.47 0.7391
AT4G15020 hAT transposon superfamily (.1... Potri.018G145554
[exp]
50.19 0.7521

Potri.003G091400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.