Plant FIBer expression Database

Potri.003G091800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G32610 74 / 5e-15 hydroxyproline-rich glycoprotein family protein (.1.2)
AT2G35230 68 / 2e-12 IKU1 HAIKU1, VQ motif-containing protein (.1.2)
AT5G46780 45 / 3e-05 VQ motif-containing protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G142400
[exp]
259 / 6e-85 AT2G35230 96 / 5e-22 HAIKU1, VQ motif-containing protein (.1.2)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05678 VQ VQ motif
Representative CDS sequence
>Potri.003G091800.1 pacid=42786099 polypeptide=Potri.003G091800.1.p locus=Potri.003G091800 ID=Potri.003G091800.1.v4.1 annot-version=v4.1
ATGGATAACTCGAAAAACAGGCAGAGTGATCACTTGGGTGTGAACAAGATAGGCAAGAATATAAAGAAGAGTCCTTTGCACCAACCCAATTTTGCAAACA
ATCCCAATAGGCAGCAGCCTCAACCTCAGGTCTACAACATAAGCAAGAATGACTTTAGAAACATTGTTCAGCAACTAACTGGCTCCCCTTCACAAGAACC
TTTGCCTAGACCTCCCCAGAATCCTCCTAAGCCTCAAAGTATGCGGCTACAGAAGATTAGACCGCCTCCTTTAACGCCTATCAATCGACCTCATATCCCC
CCACCAGTCCCAGCTCCAGCAGTGGCACCTCCAGTTCCTTACCATAATGCATTCGTTAGGCCAGGGATGCCACACCCACCTGGCCAATTTGGGCTACCAT
CTCCAACAATGACGCCGCCTTTTATACCTGGGGACTCGGGTTGGGCAAGTACAGCAGAGTCTCCTATTTCGGCGTATATGCGCTACCTTCAGAATACAAT
GATAGACCCTGGTCCCAGGGGAAACCAAGCTCAATCTCCGCTACAACCCCATCCACCACTACCACAAGGTCGAGGGCAAATTCAGCCTCAACACCAACCG
CCTTCTGGTGGTTTGCTTTTGAATCCACCTCTGGCTCCAGTACCCACGCCCGGAGTGAATGGTCCTGCCCCACCTATGCCCAACCTCCCTTCCCCATGGA
TGAATGGTCCTCCTTGTTTACCCTCACCAACATCTCAATTCCTTTTGCCCTCTCCTACTGGCTACATGAATCTGTTGTCTCCGAGGTCACCTTACCCACT
GCTTTCTCCTGGGGTTCAGTTTCCTCCACTGACACCAAATTTTGCATTTTCACCAATGGCTCAGTCAGGGATTTTGGGTCCAGGGCCTCAACCTCCACCT
TCTCCGGGCTTTTTTCCATTATCACCTTCAGGTTTTTTCCCTGTCTCAAGTCCAAGATGGAGGGATCAATAG
AA sequence
>Potri.003G091800.1 pacid=42786099 polypeptide=Potri.003G091800.1.p locus=Potri.003G091800 ID=Potri.003G091800.1.v4.1 annot-version=v4.1
MDNSKNRQSDHLGVNKIGKNIKKSPLHQPNFANNPNRQQPQPQVYNISKNDFRNIVQQLTGSPSQEPLPRPPQNPPKPQSMRLQKIRPPPLTPINRPHIP
PPVPAPAVAPPVPYHNAFVRPGMPHPPGQFGLPSPTMTPPFIPGDSGWASTAESPISAYMRYLQNTMIDPGPRGNQAQSPLQPHPPLPQGRGQIQPQHQP
PSGGLLLNPPLAPVPTPGVNGPAPPMPNLPSPWMNGPPCLPSPTSQFLLPSPTGYMNLLSPRSPYPLLSPGVQFPPLTPNFAFSPMAQSGILGPGPQPPP
SPGFFPLSPSGFFPVSSPRWRDQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G32610 hydroxyproline-rich glycoprote... Potri.003G091800
[exp]
0 1
AT2G33490 hydroxyproline-rich glycoprote... Potri.001G324800
[exp]
2.00 0.8788
AT1G15130 Endosomal targeting BRO1-like ... Potri.008G126900
[exp]
4.24 0.8748
AT1G78310 VQ motif-containing protein (.... Potri.002G099900
[exp]
10.58 0.8427
AT2G35230 IKU1 HAIKU1, VQ motif-containing pr... Potri.001G142400
[exp]
12.12 0.8657
AT3G22270 Topoisomerase II-associated pr... Potri.006G021900
[exp]
13.26 0.8639
AT5G38600 Proline-rich spliceosome-assoc... Potri.017G111300
[exp]
13.49 0.8562
AT2G38410 ENTH/VHS/GAT family protein (.... Potri.016G131900
[exp]
14.14 0.8719
Potri.012G114166
[exp]
14.69 0.8748
AT4G29810 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinas... Potri.006G146500
[exp]
15.68 0.8141 Pt-MEK1.1
AT4G13350 NIG NSP (nuclear shuttle protein)-... Potri.018G076200
[exp]
17.66 0.8341

Potri.003G091800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.