Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	UBP20.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17890 525 / 0 UBP20, AGD8 ARF-GAP domain 8 (.1.2) AT5G46750 525 / 0 AGD9, AGD8 ARF-GAP domain 9 (.1) AT2G35210 475 / 1e-167 RPA, AGD10, MEE28 MATERNAL EFFECT EMBRYO ARREST 28, root and pollen arfgap (.1.2) AT3G53710 127 / 2e-32 AGD6 ARF-GAP domain 6 (.1.2) AT2G37550 127 / 3e-32 ASP1, AGD7 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) AT5G54310 95 / 5e-21 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G17660 89 / 2e-20 AGD15 ARF-GAP domain 15 (.1) AT4G21160 84 / 6e-18 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT4G05330 82 / 3e-17 AGD13 ARF-GAP domain 13 (.1) AT3G07940 81 / 2e-16 Calcium-dependent ARF-type GTPase activating protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G142100 [exp] 721 / 0 AT4G17890 535 / 0.0 ARF-GAP domain 8 (.1.2) Potri.016G095100 [exp] 124 / 4e-31 AT3G53710 462 / 9e-161 ARF-GAP domain 6 (.1.2) Potri.006G084000 [exp] 123 / 6e-31 AT3G53710 498 / 8e-175 ARF-GAP domain 6 (.1.2) Potri.012G036900 [exp] 95 / 3e-22 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.011G127000 [exp] 98 / 6e-22 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G406300 [exp] 97 / 9e-22 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G044100 [exp] 96 / 3e-21 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.004G035800 [exp] 92 / 3e-20 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.003G198301 [exp] 87 / 2e-18 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004562 [exp] 564 / 0 AT4G17890 512 / 0.0 ARF-GAP domain 8 (.1.2) Lus10000903 [exp] 506 / 5e-180 AT4G17890 469 / 3e-165 ARF-GAP domain 8 (.1.2) Lus10004561 [exp] 481 / 1e-170 AT4G17890 451 / 2e-158 ARF-GAP domain 8 (.1.2) Lus10004125 [exp] 303 / 2e-101 AT4G17890 283 / 4e-94 ARF-GAP domain 8 (.1.2) Lus10000902 [exp] 226 / 2e-71 AT2G35210 201 / 9e-62 MATERNAL EFFECT EMBRYO ARREST 28, root and pollen arfgap (.1.2) Lus10023766 [exp] 122 / 2e-30 AT2G37550 485 / 4e-170 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10003978 [exp] 120 / 3e-30 AT2G37550 516 / 0.0 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10023765 [exp] 115 / 5e-28 AT2G37550 507 / 4e-178 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10027249 [exp] 101 / 2e-24 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10018445 [exp] 96 / 3e-21 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [poplar] [flax] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Potri.003G092300.1 pacid=42786374 polypeptide=Potri.003G092300.1.p locus=Potri.003G092300 ID=Potri.003G092300.1.v4.1 annot-version=v4.1 ATGGCGTCGGAAAATTTCACCGACAAGAACGTGGTGTTCAGAAAACTGAAAGCGAAATCGGAGAACAAGATGTGTTTTGATTGTAATGCCAAAAATCCTA CTTGGGCTTCTGTAACGTACGGGATCTTCCTTTGCATCGATTGCTCTGCTTTTCACCGTAGTCTCGGTGTACACATCAGCTTTGTTAGGTCTACGAATTT AGATTCATGGAGTCCAGAGCAACTGAGAACAATGAGCTTTGGGGGAAATAATCGTGCTCAGATTTTCTTCAAGCAGCATGGATGGAGTGATGGGGGGAAA ACTGAGGCCAAGTATACATCCAGAGCTGCGGAGTTATATAGGCAATTACTTTCAAAAGAAGTTGCTAAAAGCATGACTGAAGATGCTGGCTTGCCATCAT CACCTGTTGCTTCTCAGGCAGCCCAGGCAGCAAATGGACTTCCTGATGTCAAGATTAATGACACTCCTAAAGAAAGCTCAGTAGGAAAACAAGAAACACC TGATATCGTTCGTTCCCCAAAAGCTTCTCACACAGTCATTACTAGTTCTGTGAAGAAGCCTCTTGGTGCAAAGAGAACTGGGAAAACAGGGGGACTTGGT GCTAGAAAGCTTACTGTAAAGCCTAGTGAAAATCTCTATGACCAGAAGCCTGAGGAACCAGCACTTCCTGTGCCTTCCACAACTAACAACACCACCACAA AATCTGGCACATCTTTTGCATCTCGTTTTGAGTATGTAGATAATGTCCAACCTGCTGAGCTGATTTCTGGTGACCCACAAGTGATTAGTCATGTCTCTCC ACCAAAGTCATCAAGCTTTTTTGCAGAGTTCGGGATGGACAGTGGTTTTCCTAAGAAAGGAAGCTCAAACTCCTCAAAAGTTCAAATTCAGGAAACAGAT GAAGCAAGAAAAAAGTTTACGAATGCAAAATCAATCTCATCAGCCCAATATTTTGGTGATCAGAACAAAGCTGATGCTGATGCTCAAGTTTCATTGCAGA AATTTTCTGGCTCCTCTGCTATATCAAGTGCTGATCTTTTTGGTCACAGCGATGATCAGACTATTGATCTTGCTGCGAGTGACCTCATCAATCGGATCTC ATTCCAGGCTCAACAAGACATCTCTTCTCTGAAGAATATTGCAGGAGAGACTGGGAAGAAGCTCAGCTCCTTCGCATCAACCTTCATGACTGATCTTCAG GACAGGATCCTCTAA
AA sequence Show only first row Show all	>Potri.003G092300.1 pacid=42786374 polypeptide=Potri.003G092300.1.p locus=Potri.003G092300 ID=Potri.003G092300.1.v4.1 annot-version=v4.1 MASENFTDKNVVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAFHRSLGVHISFVRSTNLDSWSPEQLRTMSFGGNNRAQIFFKQHGWSDGGK TEAKYTSRAAELYRQLLSKEVAKSMTEDAGLPSSPVASQAAQAANGLPDVKINDTPKESSVGKQETPDIVRSPKASHTVITSSVKKPLGAKRTGKTGGLG ARKLTVKPSENLYDQKPEEPALPVPSTTNNTTTKSGTSFASRFEYVDNVQPAELISGDPQVISHVSPPKSSSFFAEFGMDSGFPKKGSSNSSKVQIQETD EARKKFTNAKSISSAQYFGDQNKADADAQVSLQKFSGSSAISSADLFGHSDDQTIDLAASDLINRISFQAQQDISSLKNIAGETGKKLSSFASTFMTDLQ DRIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Potri.003G092300 [exp]	0	1	UBP20.1
AT4G27720			Major facilitator superfamily ...		Potri.012G020500 [exp]	8.30	0.8487
AT2G20760			Clathrin light chain protein (...		Potri.004G040100 [exp]	8.48	0.8882
AT5G64090			unknown protein		Potri.003G020500 [exp]	10.00	0.8704
AT5G08580			Calcium-binding EF hand family...		Potri.007G076300 [exp]	10.63	0.8361
AT4G31480			Coatomer, beta subunit (.1.2)		Potri.018G007400 [exp]	10.67	0.9087
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Potri.010G001900 [exp]	15.23	0.8532	NPSN12.1
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Potri.008G125900 [exp]	16.37	0.7999
AT1G67930			Golgi transport complex protei...		Potri.002G058300 [exp]	17.02	0.8677
AT4G30260			Integral membrane Yip1 family ...		Potri.006G169200 [exp]	17.32	0.8872
AT5G11980			conserved oligomeric Golgi com...		Potri.006G225500 [exp]	17.94	0.8961

Compare expression of checked genes

Potri.003G092300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.