Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-UBP21.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46740 359 / 1e-112 UBP21 ubiquitin-specific protease 21 (.1) AT4G17895 358 / 1e-112 UBP20 ubiquitin-specific protease 20 (.1) AT5G57990 273 / 3e-79 UBP23 ubiquitin-specific protease 23 (.1) AT5G65450 195 / 2e-52 UBP17 ubiquitin-specific protease 17 (.1) AT4G31670 186 / 5e-50 UBP18 ubiquitin-specific protease 18 (.1) AT2G24640 181 / 7e-49 UBP19 ubiquitin-specific protease 19 (.1.2) AT1G17110 184 / 4e-48 UBP15 ubiquitin-specific protease 15 (.1.2) AT3G14400 176 / 2e-46 UBP25 ubiquitin-specific protease 25 (.1) AT4G24560 169 / 4e-43 UBP16 ubiquitin-specific protease 16 (.1) AT2G22310 122 / 6e-30 ATUBP4 ubiquitin-specific protease 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G142000 [exp] 1148 / 0 AT5G46740 350 / 9e-109 ubiquitin-specific protease 21 (.1) Potri.018G107500 [exp] 273 / 1e-78 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.006G185200 [exp] 266 / 3e-76 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.018G009500 [exp] 200 / 4e-54 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.006G270600 [exp] 197 / 7e-54 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.011G095200 [exp] 181 / 2e-47 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.001G378900 [exp] 180 / 1e-46 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.001G394600 [exp] 177 / 1e-46 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1) Potri.005G156900 [exp] 175 / 6e-45 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043126 [exp] 486 / 2e-160 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1) Lus10032623 [exp] 494 / 2e-157 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10043127 [exp] 472 / 7e-157 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1) Lus10017529 [exp] 250 / 7e-76 AT5G46740 218 / 5e-65 ubiquitin-specific protease 21 (.1) Lus10035825 [exp] 254 / 5e-72 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10036607 [exp] 253 / 8e-72 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10020116 [exp] 201 / 9e-55 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10026918 [exp] 201 / 1e-54 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10009273 [exp] 197 / 5e-52 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10005591 [exp] 181 / 7e-48 AT3G14400 639 / 0.0 ubiquitin-specific protease 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF13423 [poplar] [flax] UCH_1 Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.003G092400.1 pacid=42786697 polypeptide=Potri.003G092400.1.p locus=Potri.003G092400 ID=Potri.003G092400.1.v4.1 annot-version=v4.1 ATGGAGGTTTCAACTGAAGCAGGCGTTGACGTGCCTTCTAAAACCAAAACCCTAGATTCCAAATCTTTTATTCAGGCTTATGGCTTTTCTACCCAGTCAC AGATTGAAGCCCTAAATAACGAGCTGCTCGGAGACCCTGTGATTTCCCCCAATTCCGAGTTAAGCTGTGGAGGCCAATATTTGGTTCCTCTATCATCAAA TTCAAATGGGTTTTCACTAACTTCAACTTCAATGCCTCGCTCTGAAGAAACCCTAATCGGCACTTTGCTTCCTCATATCTTAACCTCAGGTAGCCAGATT TCGGTTTCTTCCCAGTCAAATCAGGACTGGTCTGGGTCTTTAGTAGCTAATGGTAACGAAGATGGGTTTCTATTGGATTCTGACCAGCGCTTGGTCGCTC GTTGTGATACTGACAATGGTATTTTTGATGATAATAGAGAACCTGATTCACCTATGCGAGTAGAACTAGAACTTGAGAATTCGTGGCTTGTTCATGGAGA TGTTGAGCATGAGGAAGAGGTTTTTGGTGATGATGGTGAGAAAGAGGATCCAAGGCAACTTTTTCGTTGTGAACCTAATTATCACCCAATGTATCATCAT CGTCGGGGTCATTTTGATCCTGAATTCCATGAAAATCATCCGGATTTGTCTCCTTCTTCGATTAAGAGGTTTCGTGGATCACAGGTTCCTCAATGGAGGA ATCGTTGGGATGACAGAGAGAAGACAAGGAATCAAGAATACGGGCCTCCTGGTTTTATGCAGGAAACTGGACCTACTGGTGTGGGTGCTGGGCTTTTTAA TAAAGGAAACACATGCTATATTAATGCAGTCCTGCAATGCTTTACGCATACGGTGCCTCTTGTTCAGGCTCTTCGTTCTTGCAACCATGCAATGCCCTGT AGAACTGAAGGATTCTGTGCTCTTTGTGTTATCCGTGATCACATTGAACTTTCTTTAGCTTCATCTGGAAAGATCCTCGAGCCTTTGAAACTTGTCAACA ATTTGGACAGTATTTCATCATTTTTTCGTCGATATCAGCAGGAAGATGCCCATGAATTCCTCCAATGCTTGTTAGAAAGACTTGAGAGGAGCTGTTTGGA TTCAAGCCTCACTGATGACATCTCATCCTCCCAAGATAAGAACATAGTTGAGCGGGTATTTGGAGGTCGTCTTGTGAGCAAATTGCGATGCTGCAATTGT GGTCACTTTTCTGATAAGTATGAGCCGCTGATTGACCTGAGTTTGGAGATTGAAGATGCGGACACGCTTCAAATTGCACTGGAGTCATTCACCAATGTGG AGAAAATTGAAGATTCAGAGACAAAGTTTACGTGTGAAAACTGCAAGGAGGAAGTTTCTAGGGAAAAGCAGCTTATGCTGGACAAGGCTCCTTCAATTGC TGCTCTGCATTTGAAGAGATTCAAGATTGATGGGACCTCTGTTGAGAAGATTGGCAAGCATGTGGAGTTTCCCTTGGAGTTGGACTTGAAGCCCTACATC AATGACAATGATTCCAATGATGTGGGCTTCAAGTACCAGCTGTATGCGGTTGTGGTGCATAAAGGATATTCACTTACTTCCGGACATTACGTTTGCTATA TAAGATCCTCTCCAGACACATGGCATAAGTTGGATGACCCAGAAGTCAGCAAGGAAAGGGAAGAATTTGTGCTATCTCAAGCTGCCTACATTCTGTTCTA TGCCAGGGAGGGTACACCCTGGTGTTCGAGTTTGATCAAACCACAAGAGTTTTGCTTGGATCGTAGCAACTCAAATACATCACCCAAGTCAGTTCTAGAT AATGCTAATAGTGAATGCATTAGTGTAGCAGATAAAGATAGTTTGGAGACCAGTGTAATTAAGGATGCAGTTGAGGCAACTTCAACTCACATTCCGTGTG AGAGAGAGTTTGAAGAGATTGTATCTAGAGGTGAAACTGAGGGAATTTCCTTTCAGATTTCCTGTGCCAACATGGTTGATGTTTCTCTGCCACATGGAGT AAGTGATGGCCACGATGGAGTTTTGCATGATGAGATGTTATGTTTTCCACCTGTTGAAGAAGATTACAGCAATCAGTGTGCTGAGAAAATTGGAAGAAAG GGTGATCTTCGTCCCTCAGCCCCACCCAGATCACCCACTTCAGATGTATATTCTGGAGAACTGCCAGAAGCCAGACGTTGTATTCCACGAGAACATCTGA AAGTGGAGAACCATGTAAATTGTAAAAGATCATCTAAAAAGGGCACAAAGGATTCGCAGACAGCTGAAGCTCTTAGATGCATCAAGAGAATGCCAACTGC AAGGGGCATGAAACTTATGGCTGCCTTGCTTCCTAGGAATGACAAGACCAGACCAAGATCATCTCCATGTAAAAGGGCCAGCCCTCCTGGTTCTCGCCGT AAACCCATTCGTGTGGCAGTTATTCGTTGA
AA sequence Show only first row Show all	>Potri.003G092400.1 pacid=42786697 polypeptide=Potri.003G092400.1.p locus=Potri.003G092400 ID=Potri.003G092400.1.v4.1 annot-version=v4.1 MEVSTEAGVDVPSKTKTLDSKSFIQAYGFSTQSQIEALNNELLGDPVISPNSELSCGGQYLVPLSSNSNGFSLTSTSMPRSEETLIGTLLPHILTSGSQI SVSSQSNQDWSGSLVANGNEDGFLLDSDQRLVARCDTDNGIFDDNREPDSPMRVELELENSWLVHGDVEHEEEVFGDDGEKEDPRQLFRCEPNYHPMYHH RRGHFDPEFHENHPDLSPSSIKRFRGSQVPQWRNRWDDREKTRNQEYGPPGFMQETGPTGVGAGLFNKGNTCYINAVLQCFTHTVPLVQALRSCNHAMPC RTEGFCALCVIRDHIELSLASSGKILEPLKLVNNLDSISSFFRRYQQEDAHEFLQCLLERLERSCLDSSLTDDISSSQDKNIVERVFGGRLVSKLRCCNC GHFSDKYEPLIDLSLEIEDADTLQIALESFTNVEKIEDSETKFTCENCKEEVSREKQLMLDKAPSIAALHLKRFKIDGTSVEKIGKHVEFPLELDLKPYI NDNDSNDVGFKYQLYAVVVHKGYSLTSGHYVCYIRSSPDTWHKLDDPEVSKEREEFVLSQAAYILFYAREGTPWCSSLIKPQEFCLDRSNSNTSPKSVLD NANSECISVADKDSLETSVIKDAVEATSTHIPCEREFEEIVSRGETEGISFQISCANMVDVSLPHGVSDGHDGVLHDEMLCFPPVEEDYSNQCAEKIGRK GDLRPSAPPRSPTSDVYSGELPEARRCIPREHLKVENHVNCKRSSKKGTKDSQTAEALRCIKRMPTARGMKLMAALLPRNDKTRPRSSPCKRASPPGSRR KPIRVAVIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17895		UBP20	ubiquitin-specific protease 20...		Potri.003G092400 [exp]	0	1	Pt-UBP21.1
AT2G46920		POL	poltergeist, Protein phosphata...		Potri.014G110500 [exp]	1.41	0.7784	Pt-POL.1
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.005G135500 [exp]	5.29	0.7424
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Potri.011G143100 [exp]	5.29	0.7357	SR45.1
AT4G33400			Vacuolar import/degradation, V...		Potri.014G029600 [exp]	6.92	0.7773
AT5G63550			DEK domain-containing chromati...		Potri.015G100700 [exp]	11.22	0.7432
AT4G30870		ATMUS81	ARABIDOPSIS THALIANA MMS AND U...		Potri.003G202300 [exp]	13.56	0.7099
AT5G52950			unknown protein		Potri.012G033800 [exp]	18.33	0.7179
AT4G04940			transducin family protein / WD...		Potri.006G078900 [exp]	23.02	0.7392
AT4G25500		ATRSP40, AT-SRP...	ARABIDOPSIS THALIANA ARGININE/...		Potri.015G135800 [exp]	25.07	0.7164	RSP40.2
AT5G63950		CHR24	chromatin remodeling 24 (.1)		Potri.007G102800 [exp]	29.44	0.6833	CHR932

Compare expression of checked genes

Potri.003G092400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.