Plant FIBer expression Database

Potri.003G092900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G092900.1 pacid=42787258 polypeptide=Potri.003G092900.1.p locus=Potri.003G092900 ID=Potri.003G092900.1.v4.1 annot-version=v4.1
ATGTTGTCCCGGGCAGCTTGCAAATATGGGTTTTGCGTTCTGGTTGGTTTATCCTGCGTGGTTTTCCTTGTCTTCGCCACTTATGAGAACGCAAGACATG
GACCCCATACGGTGCGTCTTTCCGTCCACTTGTCTTCCTTAACCTTCAAAGAGTTGAACCTTGGTACCTCTCGAAAATTGGACACCGTATGGAACACCAG
CATCGCTGTTTTTGCTAAGAATCCTGAACCCTGGGCTAGCTTTAATCCAACCAGAGGTTCATTTGCTTTCGTTAAATACGGTGGAGTTGGTATTTCATGC
GGCGAGTTAGTGGAGGATGGGGAGGAATTACCCATGGGTGTTGGAAATGTGTCAACACTGCAATTTAAAAGCAAACCTTGTGATTTCCCGAATCAAATAG
ATGATGATGGATTGGGGGCTAGGTTAAGAAGTGATTTAGATCGCAAGGAGCACAACGCCAGTGGTTGTTCAAGGGACATGGATCTACGGCTTGTATAG
AA sequence
>Potri.003G092900.1 pacid=42787258 polypeptide=Potri.003G092900.1.p locus=Potri.003G092900 ID=Potri.003G092900.1.v4.1 annot-version=v4.1
MLSRAACKYGFCVLVGLSCVVFLVFATYENARHGPHTVRLSVHLSSLTFKELNLGTSRKLDTVWNTSIAVFAKNPEPWASFNPTRGSFAFVKYGGVGISC
GELVEDGEELPMGVGNVSTLQFKSKPCDFPNQIDDDGLGARLRSDLDRKEHNASGCSRDMDLRLV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G092900
[exp]
0 1
AT5G22890 C2H2ZnF C2H2 and C2HC zinc fingers sup... Potri.004G217100
[exp]
4.69 0.9564
AT5G36110 CYP716A1 "cytochrome P450, family 716, ... Potri.001G002800
[exp]
7.14 0.9444 CYP716D1
AT1G52820 2-oxoglutarate (2OG) and Fe(II... Potri.001G175900
[exp]
7.41 0.9400
AT2G18210 unknown protein Potri.007G022200
[exp]
7.87 0.9474
AT5G44440 FAD-binding Berberine family p... Potri.001G462000
[exp]
9.16 0.9423
AT2G38830 Ubiquitin-conjugating enzyme/R... Potri.002G046200
[exp]
10.24 0.9202
AT3G52970 CYP76G1 "cytochrome P450, family 76, s... Potri.005G029700
[exp]
12.48 0.9386
AT4G35160 O-methyltransferase family pro... Potri.013G121900
[exp]
16.61 0.9090
AT2G35730 Heavy metal transport/detoxifi... Potri.003G110500
[exp]
16.97 0.9233
AT1G68765 IDA INFLORESCENCE DEFICIENT IN ABS... Potri.008G114600
[exp]
18.00 0.9127

Potri.003G092900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.