Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46700 369 / 4e-130 TRN2, TET1 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) AT2G19580 284 / 2e-96 TET2 tetraspanin2 (.1) AT3G45600 226 / 2e-73 TET3 tetraspanin3 (.1) AT4G30430 221 / 1e-71 TET9 tetraspanin9 (.1) AT2G23810 221 / 1e-71 TET8 tetraspanin8 (.1) AT4G28050 215 / 1e-69 TET7 tetraspanin7 (.1) AT5G60220 193 / 4e-60 TET4 tetraspanin4 (.1) AT1G63260 182 / 2e-56 TET10 tetraspanin10 (.1.2.3) AT3G12090 181 / 6e-56 TET6 tetraspanin6 (.1) AT1G18520 177 / 1e-54 TET11 tetraspanin11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G141400 [exp] 467 / 1e-168 AT5G46700 367 / 3e-129 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.006G150400 [exp] 304 / 2e-104 AT2G19580 367 / 5e-129 tetraspanin2 (.1) Potri.006G177900 [exp] 236 / 2e-77 AT2G23810 317 / 4e-109 tetraspanin8 (.1) Potri.009G015100 [exp] 234 / 2e-76 AT3G45600 388 / 7e-137 tetraspanin3 (.1) Potri.018G099800 [exp] 227 / 4e-74 AT2G23810 322 / 3e-111 tetraspanin8 (.1) Potri.008G041600 [exp] 208 / 2e-66 AT3G12090 397 / 2e-140 tetraspanin6 (.1) Potri.010G220300 [exp] 207 / 3e-66 AT3G12090 399 / 2e-141 tetraspanin6 (.1) Potri.015G055700 [exp] 189 / 4e-59 AT1G18520 196 / 6e-62 tetraspanin11 (.1) Potri.001G107200 [exp] 179 / 2e-55 AT1G63260 416 / 1e-148 tetraspanin10 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017336 [exp] 435 / 7e-156 AT5G46700 389 / 5e-138 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10001668 [exp] 427 / 9e-153 AT5G46700 384 / 8e-136 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10008563 [exp] 300 / 1e-102 AT2G19580 411 / 1e-146 tetraspanin2 (.1) Lus10007998 [exp] 241 / 1e-79 AT2G19580 369 / 6e-130 tetraspanin2 (.1) Lus10023216 [exp] 237 / 5e-78 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10040551 [exp] 237 / 7e-78 AT2G19580 364 / 3e-128 tetraspanin2 (.1) Lus10008891 [exp] 234 / 7e-77 AT2G23810 377 / 5e-133 tetraspanin8 (.1) Lus10019965 [exp] 230 / 4e-75 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10015494 [exp] 224 / 6e-73 AT2G23810 370 / 2e-130 tetraspanin8 (.1) Lus10038473 [exp] 216 / 1e-69 AT3G45600 446 / 9e-160 tetraspanin3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [poplar] [flax] Tetraspannin PF00335 [poplar] [flax] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Potri.003G093000.1 pacid=42785154 polypeptide=Potri.003G093000.1.p locus=Potri.003G093000 ID=Potri.003G093000.1.v4.1 annot-version=v4.1 ATGGCACTAAGCAATAATGTTATTGGTGCTATCAACTTTGTCGCCATGCTTCTCTCCATCCCAGTCATAGGTGCTGGGATTTGGCTAGCAACGGAACCAG ACAACTCTTGTGTCAAGATCCTACAATGGCCTGTCATTATCTTGGGAATGCTGATCCTGAAAGTAGCTCTTGCAGGCTTTGTAGGAGGTTTCTGGAGAAT CCCTTGGCTCCTTATCTTTTATCTCATTGCCATGCTCATCCTTATAATATTGCTCGCATGTCTAACGGTTTTTATATACATGGTGACTGTTAGAGGCTCA GGCCACCTTGCACCGAGTAGAGCCTACTTGGAATATCGTCTTGATGATTTTTCAGGTTGGCTTCGCCGAAGGGTTCATAGTTCATATAAGTGGGATCGGA TAAGAGGTTGCCTTAGCTCCTCTAATACGTGTGCTGAGTTGAACCAGAGTTATCACATGGCTCAAGATTTCTTCAATGCTCATATTAGCCCCTTGCAGTC AGGATGCTGTAAGCCCCCGACCGAATGTGGGTATACATTTGTGAACCCAACATATTGGATTAGTCCAATAAACATTGCTGCAGATATGGACTGCCTGAAA TGGAACAATGACCAAAATCAACTTTGCTACAATTGCGATTCATGCAAGGCCGGATTATTGGCTAATTTGAAAAGGGAATGGAGAAGGGCAGACGTCGTAC TGCTCATTACTCTCATTGCCTTAATATGCGTTTACTTGATTGGTTGCTGTGCCTTTAGGAATGCCAAAACAGAAGACTTGTTTCGCAGATACAAACAAGG TTATACATAA
AA sequence Show only first row Show all	>Potri.003G093000.1 pacid=42785154 polypeptide=Potri.003G093000.1.p locus=Potri.003G093000 ID=Potri.003G093000.1.v4.1 annot-version=v4.1 MALSNNVIGAINFVAMLLSIPVIGAGIWLATEPDNSCVKILQWPVIILGMLILKVALAGFVGGFWRIPWLLIFYLIAMLILIILLACLTVFIYMVTVRGS GHLAPSRAYLEYRLDDFSGWLRRRVHSSYKWDRIRGCLSSSNTCAELNQSYHMAQDFFNAHISPLQSGCCKPPTECGYTFVNPTYWISPINIAADMDCLK WNNDQNQLCYNCDSCKAGLLANLKREWRRADVVLLITLIALICVYLIGCCAFRNAKTEDLFRRYKQGYT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Potri.003G093000 [exp]	0	1
AT3G18260			Reticulon family protein (.1)		Potri.015G044300 [exp]	3.31	0.9205
AT1G53163			unknown protein		Potri.011G116600 [exp]	5.47	0.9092
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Potri.005G117600 [exp]	6.70	0.8558
AT3G27027			Protein of unknown function (D...		Potri.017G064972 [exp]	6.78	0.9128
AT2G26600			Glycosyl hydrolase superfamily...		Potri.006G067500 [exp]	8.66	0.8393
AT1G60030		ATNAT7	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Potri.008G146400 [exp]	8.94	0.9106
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Potri.007G024500 [exp]	10.48	0.8907	Pt-MNP.1
AT4G05220			Late embryogenesis abundant (L...		Potri.011G027400 [exp]	10.53	0.9127
AT4G39700			Heavy metal transport/detoxifi...		Potri.007G087300 [exp]	10.58	0.9057
AT3G18670			Ankyrin repeat family protein ...		Potri.004G003600 [exp]	15.00	0.8852

Compare expression of checked genes

Potri.003G093000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.