Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27740 182 / 2e-53 RFC3, EMB251, EMB161, EMB2775 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) AT1G21690 72 / 8e-14 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G63160 65 / 3e-11 EMB2811, RFC2 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) AT1G77470 58 / 4e-09 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G040000 [exp] 172 / 1e-49 AT5G27740 621 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.005G120901 [exp] 166 / 3e-44 AT5G27740 240 / 8e-72 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.007G022900 [exp] 157 / 4e-42 AT5G27740 261 / 2e-82 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.005G181300 [exp] 68 / 3e-12 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.002G081200 [exp] 67 / 6e-12 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Potri.003G123200 [exp] 66 / 1e-11 AT1G63160 587 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023809 [exp] 175 / 2e-52 AT5G27740 138 / 2e-39 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10019391 [exp] 176 / 4e-51 AT5G27740 643 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10041764 [exp] 166 / 1e-44 AT5G27740 269 / 3e-84 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10028316 [exp] 160 / 3e-43 AT5G27740 271 / 6e-86 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10043248 [exp] 145 / 1e-38 AT5G27740 561 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10023810 [exp] 100 / 9e-24 AT5G27740 72 / 1e-14 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10028543 [exp] 66 / 1e-11 AT1G21690 563 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Lus10018144 [exp] 66 / 2e-11 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10025689 [exp] 64 / 1e-10 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10024504 [exp] 62 / 3e-10 AT1G63160 615 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G093400.10 pacid=42784583 polypeptide=Potri.003G093400.10.p locus=Potri.003G093400 ID=Potri.003G093400.10.v4.1 annot-version=v4.1 ATGGCATCGTTCTTCAACTTGTGTTTTCCTTGGTTAAAATCCAAAGAAAGTCGCAGCGCAGATATGTCCACGCAACCAGACAATTCTCATGATCATCCTT CCGACACAAAAGATATTCATTGTATGAGAAAATCAGATGAGAACAGCAAGAGAATATTGAGGACAGCTAATTATGAGCCATTAATGGTAACAGCATGTGC AGCATCACGTAGAAGCACTCATTTGCCGGTTGCTAAAGGAGAGAGGCCTGAAGTAGGGCATACTTTCAGCTGGGCGGAGAAATATCAGCCCAAGGCTTTG AAGGACTTTATCTGTCACAGGGAGAAGGCTGAATCCATCCGGAGTACGGTATGCCGTGGACATTATAATCATTGTATATTTGAAGGACCTCCAGGGGTAG GAAAGAGAACGATGGCTCTAGCAATGCTTAGAGAGTGTGCTGGAATGGATATAACTGAGACAAAGGAGGAAATCAGAGAATTCGATCTGAGTGGAAGCGG GCCAATTTCTAACATTCCTGTCAAAATTGAAGTATCTTCACAGCTCATTCAGATCGATCTATCTGAAATAAGATGGCATGCTACAGAAGTAATTTTGGAT CTACTCCAGGAAACATATATAAACGGCCAAGCAATTATTGTAAACGAGGCAGAGCGTCTCTCTAAGGATGCCCAACTCCGAATCAAAAGCTTCCTACAGA CTTATAGAGGCCACTGCAAAGTCATCTTCTGCTGCTATGATATTTCCAGGCTCCACGATCTCAGTCCCCTCTGCATGGTTATTCCACTCCTTCCACCTTC AGATGAACAGATTGTTGAAGTATTGCATTTCATTGCTAAAAAACAAGACATTGAATTACCTGACCAGTTAGCCAACAACATAGCAGAGAAGTCCAAACGT TGCCTTCAGCAAGCCATTCGGTCATTTGAGGCCACCTGGCATTCGAATTATCCCTTTAAAGAAGAACAACTGGTTTTGACTGGCTGGGAAAAAGAAATTG CAGACATTGCTACAAGTATAATTGAAGAGCAAAGCTCTAAACGGTTGTTTCTTTTCAGACAAAAGCTTCAAATTCTGTTGCAGCACAATTTGTGTCCCCA ATTTGTTTTTTTTACATTAGTGGAAGAACTAAAGAGGCATTTGGATGACCGAATTCAAATGCAAATCGGAGTCTTTACCCAGACATACAACGATGATCAG AATGAAGACCTCTGTATTGAAAGAAAGAAAATGAGAAACCAAGAAGAGTTATTTTGTGGGCAAATGAGAACAAGGGTTGCCGGGTTTGTGAGGATAGAAG AATTTGTAGCTAAGTTCATGAGCTTTTACAAGTACAACGGGATAAAACAAGGTTGA
AA sequence Show only first row Show all	>Potri.003G093400.10 pacid=42784583 polypeptide=Potri.003G093400.10.p locus=Potri.003G093400 ID=Potri.003G093400.10.v4.1 annot-version=v4.1 MASFFNLCFPWLKSKESRSADMSTQPDNSHDHPSDTKDIHCMRKSDENSKRILRTANYEPLMVTACAASRRSTHLPVAKGERPEVGHTFSWAEKYQPKAL KDFICHREKAESIRSTVCRGHYNHCIFEGPPGVGKRTMALAMLRECAGMDITETKEEIREFDLSGSGPISNIPVKIEVSSQLIQIDLSEIRWHATEVILD LLQETYINGQAIIVNEAERLSKDAQLRIKSFLQTYRGHCKVIFCCYDISRLHDLSPLCMVIPLLPPSDEQIVEVLHFIAKKQDIELPDQLANNIAEKSKR CLQQAIRSFEATWHSNYPFKEEQLVLTGWEKEIADIATSIIEEQSSKRLFLFRQKLQILLQHNLCPQFVFFTLVEELKRHLDDRIQMQIGVFTQTYNDDQ NEDLCIERKKMRNQEELFCGQMRTRVAGFVRIEEFVAKFMSFYKYNGIKQG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Potri.003G093400 [exp]	0	1
AT4G17920			RING/U-box superfamily protein...		Potri.003G093500 [exp]	3.00	0.9071
AT1G73965		CLE13	CLAVATA3/ESR-RELATED 13 (.1)		Potri.008G115600 [exp]	3.87	0.9017	CLE12.2
AT1G11040			HSP40/DnaJ peptide-binding pro...		Potri.005G179400 [exp]	4.00	0.9049
AT5G13500			unknown protein		Potri.003G195600 [exp]	12.48	0.8699
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.012G015032 [exp]	14.56	0.8887
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Potri.004G181800 [exp]	17.97	0.8416
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G120800 [exp]	22.80	0.8459	FLA14.5
AT1G21070			Nucleotide-sugar transporter f...		Potri.005G260300 [exp]	22.91	0.8670
					Potri.008G076001 [exp]	23.04	0.7007
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.009G012200 [exp]	23.15	0.8649	FLA14.12

Compare expression of checked genes

Potri.003G093400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.