Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46840 363 / 4e-121 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G14100 55 / 9e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G50250 52 / 3e-07 CP31B chloroplast RNA-binding protein 31B (.1) AT1G71770 47 / 2e-05 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT1G17370 47 / 2e-05 UBP1B oligouridylate binding protein 1B (.1.2) AT2G21440 46 / 5e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G40490 45 / 8e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G09880 45 / 0.0001 Splicing factor, CC1-like (.1) AT3G18610 45 / 0.0001 ATNUC-L2, PARLL1, ATRANGAP1 PARALLEL1-LIKE 1, nucleolin like 2 (.1) AT4G24770 44 / 0.0001 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G140300 [exp] 731 / 0 AT5G46840 365 / 1e-121 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.005G198500 [exp] 48 / 2e-05 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1) Potri.005G148100 [exp] 47 / 3e-05 AT5G09880 553 / 0.0 Splicing factor, CC1-like (.1) Potri.016G090700 [exp] 45 / 9e-05 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G062700 [exp] 44 / 0.0002 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.006G127200 [exp] 44 / 0.0002 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G344900 [exp] 43 / 0.0003 AT5G40490 286 / 1e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G009800 [exp] 42 / 0.0007 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1) Potri.015G086500 [exp] 42 / 0.0007 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004563 [exp] 421 / 1e-143 AT5G46840 337 / 6e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10000904 [exp] 367 / 6e-124 AT5G46840 305 / 9e-102 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10042589 [exp] 48 / 2e-05 AT2G21440 825 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10029372 [exp] 47 / 3e-05 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10016174 [exp] 44 / 0.0002 AT3G52380 275 / 3e-91 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10041952 [exp] 44 / 0.0002 AT5G50250 272 / 2e-90 chloroplast RNA-binding protein 31B (.1) Lus10041602 [exp] 44 / 0.0002 AT3G52150 263 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017962 [exp] 43 / 0.0004 AT5G50250 274 / 5e-92 chloroplast RNA-binding protein 31B (.1) Lus10017923 [exp] 43 / 0.0007 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1) Lus10022044 [exp] 42 / 0.001 AT2G21440 832 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.003G093900.1 pacid=42787164 polypeptide=Potri.003G093900.1.p locus=Potri.003G093900 ID=Potri.003G093900.1.v4.1 annot-version=v4.1 ATGGGCAGAAGGGAGCACCCGGAACCGGAGACTGCCACCACCCAGAAGAACATAGTTTCTGCTTCTTCCGACATCTTCAAATTCCTATTCAGCGGCGCCA ATCAAACCGCTGCTACCTTCTCCCTTTTCACCGATAGCAACCCTTTCAAAAGAAAACCCGACGACCCAAAATCCAACGAAAACCCCAGCGCCAATGCCGA TATTCAAGACCCTAATTTCAACGGTACTGCAATGAAACTAAAAAAGGTGAAAACCCAAAATCCAAATTTGGGTCTTGAGCCGAAAGAAGAGAAAACGTTA AATGAGAGTGGAAGGAAGAGAAAGAAGAGAAAGAGAGATGATCTTGAGAGCGAATATGAGGCTAAGAAGTACGGTCCAGTGGTAAATAATGAGGAAAATG TGCGTGTTGTTGTTGGCGCGAAGAGGAAAAAGGCTGATGATGCGGCGGATGTGCTGGTTTCAAAGGAGGGTGAAGGTTTTGACGATGAGAGGAAGTTATT AAGGACTGTGTTTGTTGGGAATTTGCCTTTGAAGGTGAAGAAGAAGGCACTCATTAAGGAATTTAGTAAGTTTGGGGAGGTTGAGTCTTTGAGGATCCGG TCTATGCCAATTACTGAATCCAAGATACCCAGGAAGGGAGCTATTTTGTTGAAGAAATTTAATGATAATGCTGACAGTGTTCATGCATATATTGTTTTCA ACACTGAGCAATCTGCAGAGGCATCTCTCACCCATAATATGGCTGTGGTTGGAGGAAATCACATTCGTGTAGATAGGGCATGCCCACCTCGTAAGAAGTT AAAGGGGTCAGATGCTCCCCTTTATGATAACAAGAGGACAGTTTTTGTTGGTAACCTTCCCTTTGATGTGAAGGACGAAGAAATTTATCAGCTTTTCACT GGTATTAAAGATCTTGCATCCAGCATTGAAGCTGTTCGGGTTATTAGACATCCTCATATAGGTCTGGGAAAGGGCATCGCCTATGTGCTGTTTAAAACAA GGGAAGCTGCAAATTTGGTGATCAAGAAACGAAATTTGAAGCTTCGTGATCGAGAACTGAGAGCATCTCATGCCAGGCAGGATTCTACGCCATCTAAGAG AAGGAACTCATTTGCAGGAGAGACAGCTAATTTGTCAAACAAGAAGTTGGCAACAGATTCGAGGACTCCTGATCGCAACAACAGGCCAGATACAAAGGCT GCCAAGTCCTATCAGGGCTTGCGTGCTAGCAAATCTGGTATTGAGAAGAAAGTCCATGCTCCCGCAAATGCAAAACGCAATGGAACAGCTAAGGTGAAAT CTAAGACTCAAAGAGAAAAGCGTCAGGAGAAAAGGCCAGCTGTTGCTCTAAGAAAGGCAAAAGCTACAGCACTCAAGGATGGTGGTGCTTCAGGACCAGC CAGGCAAAAACGCAAGCTAGATAGCCGGACCCCAGACAGTTCCAACAGAAAGAAGAAAGCCAGGAAATTTGGGTAG
AA sequence Show only first row Show all	>Potri.003G093900.1 pacid=42787164 polypeptide=Potri.003G093900.1.p locus=Potri.003G093900 ID=Potri.003G093900.1.v4.1 annot-version=v4.1 MGRREHPEPETATTQKNIVSASSDIFKFLFSGANQTAATFSLFTDSNPFKRKPDDPKSNENPSANADIQDPNFNGTAMKLKKVKTQNPNLGLEPKEEKTL NESGRKRKKRKRDDLESEYEAKKYGPVVNNEENVRVVVGAKRKKADDAADVLVSKEGEGFDDERKLLRTVFVGNLPLKVKKKALIKEFSKFGEVESLRIR SMPITESKIPRKGAILLKKFNDNADSVHAYIVFNTEQSAEASLTHNMAVVGGNHIRVDRACPPRKKLKGSDAPLYDNKRTVFVGNLPFDVKDEEIYQLFT GIKDLASSIEAVRVIRHPHIGLGKGIAYVLFKTREAANLVIKKRNLKLRDRELRASHARQDSTPSKRRNSFAGETANLSNKKLATDSRTPDRNNRPDTKA AKSYQGLRASKSGIEKKVHAPANAKRNGTAKVKSKTQREKRQEKRPAVALRKAKATALKDGGASGPARQKRKLDSRTPDSSNRKKKARKFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Potri.003G093900 [exp]	0	1
					Potri.001G016032 [exp]	4.47	0.6891
AT1G79390			unknown protein		Potri.010G174700 [exp]	4.58	0.7190
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Potri.016G093200 [exp]	5.65	0.6978
AT3G15280			unknown protein		Potri.001G398300 [exp]	10.24	0.6985
					Potri.006G276250 [exp]	16.43	0.6367
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Potri.001G311600 [exp]	17.66	0.6503
AT3G54610		ATGCN5, HAG1, H...	HISTONE ACETYLTRANSFERASE 1, g...		Potri.005G217400 [exp]	24.45	0.6301
AT1G16650			S-adenosyl-L-methionine-depend...		Potri.007G065300 [exp]	26.05	0.6661
AT2G25910			3'-5' exonuclease domain-conta...		Potri.018G058900 [exp]	32.12	0.6325
AT1G55880			Pyridoxal-5'-phosphate-depende...		Potri.001G367000 [exp]	34.46	0.6167

Compare expression of checked genes

Potri.003G093900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.