Plant FIBer expression Database

Potri.003G094000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G17790 378 / 8e-134 SNARE associated Golgi protein family (.1)
AT1G71940 326 / 2e-113 SNARE associated Golgi protein family (.1.2)
AT4G09580 308 / 3e-106 SNARE associated Golgi protein family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G140200
[exp]
452 / 2e-163 AT4G17790 379 / 2e-134 SNARE associated Golgi protein family (.1)
Potri.013G113000
[exp]
327 / 2e-113 AT4G09580 454 / 5e-163 SNARE associated Golgi protein family (.1)
Potri.019G083500
[exp]
326 / 5e-113 AT1G71940 460 / 1e-165 SNARE associated Golgi protein family (.1.2)
Potri.008G202600
[exp]
44 / 3e-05 AT5G19070 338 / 1e-117 SNARE associated Golgi protein family (.1)
Potri.010G030800
[exp]
42 / 0.0001 AT5G19070 321 / 7e-111 SNARE associated Golgi protein family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004564
[exp]
389 / 4e-138 AT4G17790 388 / 1e-137 SNARE associated Golgi protein family (.1)
Lus10000905
[exp]
388 / 6e-138 AT4G17790 387 / 2e-137 SNARE associated Golgi protein family (.1)
Lus10017913
[exp]
318 / 7e-110 AT4G09580 442 / 2e-158 SNARE associated Golgi protein family (.1)
Lus10014818
[exp]
279 / 5e-95 AT1G71940 374 / 2e-132 SNARE associated Golgi protein family (.1.2)
Lus10034028
[exp]
49 / 1e-06 AT5G19070 363 / 3e-127 SNARE associated Golgi protein family (.1)
Lus10004421
[exp]
48 / 3e-06 AT5G19070 361 / 2e-126 SNARE associated Golgi protein family (.1)
Lus10021942
[exp]
47 / 5e-06 AT5G19070 343 / 9e-120 SNARE associated Golgi protein family (.1)
Lus10028016
[exp]
45 / 2e-05 AT1G03260 328 / 2e-113 SNARE associated Golgi protein family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09335 SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence
>Potri.003G094000.1 pacid=42785289 polypeptide=Potri.003G094000.1.p locus=Potri.003G094000 ID=Potri.003G094000.1.v4.1 annot-version=v4.1
ATGAAGGGGAAAGGAGGGAATGTGGGATCCAGATTTCCTTTGAGCTTTTGGGAAGTTGGTGCTGCTTCCTCTGTTGTGCTGGGATTCGTTTTGTGTCTTT
TGGGTGTTTACCTAACCATGCCTGCATCGGACTATAGTTTCCTCAAGCTTCCTCGTACCCTCGAAGATCTTCAAATCCTCAGGGATCACCTTGAGACCTA
TACAATTGACTACACCGCACAAGTCCTGGTGGGGTACTGTGTGGTCTACATTTTCATGCAGACCTTTATGATCCCCGGGACTGTTTTTATGTCATTGCTT
GCTGGGGCACTTTTTGGAGTACTTAAAGGTGTAGCTTTGGTGGTGTTCACAGCCACTGCTGGTGCTTCTTCTTGCTATTTTCTGTCAAAACTAATTGGGC
GGCCTCTTGTCTTTAGTTTGTGGCCTGACAAACTTAGTTTCTTCCAAGAGCAGGTGGCTAGAAGAAGAGGAGGATTGTTGAACTACATGCTTTTCTTACG
ACTAACCCCAACTTTGCCAAATACATTTATAAATGTTGCTTCACCAATAGTTGATGTTCCTTATCACATTTTCTTCCTGGCAACCTTGATTGGACTTATT
CCTGCTGCTTATGTCACTGTTAAGGCTGGAATAGCACTTGGAGAATTGCAATCGATAGGGGACCTTTATGACTTCAACTCCATTGCCACTCTGTTCCTTA
TCGGGATCATCTCAATTACCCCTACATTAATGAGCAAGAGTAAATCATAG
AA sequence
>Potri.003G094000.1 pacid=42785289 polypeptide=Potri.003G094000.1.p locus=Potri.003G094000 ID=Potri.003G094000.1.v4.1 annot-version=v4.1
MKGKGGNVGSRFPLSFWEVGAASSVVLGFVLCLLGVYLTMPASDYSFLKLPRTLEDLQILRDHLETYTIDYTAQVLVGYCVVYIFMQTFMIPGTVFMSLL
AGALFGVLKGVALVVFTATAGASSCYFLSKLIGRPLVFSLWPDKLSFFQEQVARRRGGLLNYMLFLRLTPTLPNTFINVASPIVDVPYHIFFLATLIGLI
PAAYVTVKAGIALGELQSIGDLYDFNSIATLFLIGIISITPTLMSKSKS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G17790 SNARE associated Golgi protein... Potri.003G094000
[exp]
0 1
AT5G65760 Serine carboxypeptidase S28 fa... Potri.007G008100
[exp]
2.00 0.7614
AT2G41750 DTW domain-containing protein ... Potri.006G051600
[exp]
8.71 0.7265
AT5G24690 Protein of unknown function (D... Potri.001G210500
[exp]
12.48 0.7969
AT5G18640 alpha/beta-Hydrolases superfam... Potri.010G019500
[exp]
15.55 0.7692
AT3G13062 Polyketide cyclase/dehydrase a... Potri.014G001100
[exp]
38.92 0.7305
AT3G08890 Protein of unknown function, D... Potri.006G104000
[exp]
45.98 0.6738
AT4G04955 ATALN allantoinase (.1) Potri.004G041800
[exp]
60.28 0.7017
AT4G35750 SEC14 cytosolic factor family ... Potri.005G246800
[exp]
62.04 0.6714
AT4G36730 bZIP GBF1 G-box binding factor 1 (.1.2) Potri.007G029400
[exp]
62.32 0.7080
AT5G53940 Yippee family putative zinc-bi... Potri.011G115700
[exp]
64.59 0.6719

Potri.003G094000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.