Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16760 373 / 1e-129 AtITPK1 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) AT4G08170 288 / 2e-95 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) AT4G33770 260 / 3e-84 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2) AT2G43980 96 / 2e-21 ATITPK4 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G140000 [exp] 649 / 0 AT5G16760 372 / 6e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.019G047200 [exp] 331 / 8e-113 AT5G16760 332 / 1e-113 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.005G149800 [exp] 295 / 2e-98 AT4G08170 518 / 0.0 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Potri.009G084600 [exp] 254 / 1e-82 AT4G08170 379 / 1e-131 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Potri.017G007500 [exp] 81 / 1e-16 AT2G43980 534 / 0.0 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1) Potri.007G144701 [exp] 47 / 2e-06 AT2G43980 145 / 1e-41 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039098 [exp] 340 / 9e-114 AT5G55990 374 / 1e-128 calcineurin B-like protein 2 (.1) Lus10038765 [exp] 331 / 9e-113 AT5G16760 350 / 4e-121 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10035811 [exp] 310 / 2e-104 AT5G16760 311 / 1e-105 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10035662 [exp] 286 / 8e-95 AT4G08170 455 / 2e-161 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10032808 [exp] 263 / 1e-85 AT4G08170 500 / 5e-179 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10007689 [exp] 259 / 2e-84 AT4G08170 499 / 2e-178 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10037247 [exp] 211 / 1e-66 AT4G08170 345 / 3e-119 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10020513 [exp] 182 / 4e-55 AT4G08170 331 / 2e-113 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10006145 [exp] 81 / 5e-17 AT2G43980 317 / 1e-105 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1) Lus10033768 [exp] 77 / 3e-15 AT2G43980 395 / 4e-135 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [poplar] [flax] ATP-grasp PF05770 [poplar] [flax] Ins134_P3_kin Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Potri.003G094100.1 pacid=42784993 polypeptide=Potri.003G094100.1.p locus=Potri.003G094100 ID=Potri.003G094100.1.v4.1 annot-version=v4.1 ATGGCGGACGATATGAGAGGCGTTGTTGGCTACGCGCTGTTACCCAAGAAACAACAAAGCTTCATCCAAGACTCGCTACTCTCTCTCTGCAAATCAAGAG GCATCGATCTGGTGAGAATCGATCAAGACCGTCGATTAATCGATCAAGGACCGTTCGATTGCGTTCTCCACAAGATGTACGGTGATGATTGGAGGAAACA ACTCGAGGAGTTCCAAATTCAGAACCCTAACTCCACAATAATTGACTCTCCCGTCTCAATCCAACGACTCCACAACCGAATCTCGATGCTGCAAGCGGTT TCGGAGTTAAAGATCGAGTCGGGAACGGATACTTTCGGCATTCCGAAACAGATTGTGATTTACGATAAGGAATCGCTTTTCGACCGCCAATCTTGGGAGT TTCTAAAATATCCGGTCATTGCGAAACCATTGATTGCTGATGGTAGCGCAAAATCTCATAAAATGGCTCTGGTTTTTAACCATGAGGGTTTAAATAAACT GAAACCCCCAATTGTCTTACAAGAGTTTGTTAATCACGGCGGCGTTATCTTTAAAGTTTACGTGGTAGGGGAATTTGTTAAGTGTGTGAAAAGGAAGTCT TTGCCAGATGTTTCTGAAGAGAAACTGAAGGGTTTGGAAGGGTCATTGCCGTTTTCTCAGGTCTCCAATTTGACTAGTGACGAGAGAAATGATGATAAGT ACTATAAGTTGATGGATTTGGAGGAAACTGAGTTGCCACCGCAGAGTTTTATTACGGATATTGCTAGAGGGTTGAGGAGGGGATTGAAGTTGAATTTGTT TAATTTTGATGTCATTAGGGATGCTAGAATTGGGAATAGATATCTTGTGATTGACATTAATTACTTTCCTGGGTATGCCAAAATGCCCGGTTACGAGACT GTTTTGACTGATTTCTTTTGTGATGTGGTGGGGAAGAAGAGTTCGAGTGAGGAGAAAGAGATAGGTGGGGTTGAGAAGCTGCAGGTGGTGCGTAATTGTG ACGTGGACGTGACCAAGATTGTGAGTAAGACTTGTTGTAGTGATGGGGAAGACTGA
AA sequence Show only first row Show all	>Potri.003G094100.1 pacid=42784993 polypeptide=Potri.003G094100.1.p locus=Potri.003G094100 ID=Potri.003G094100.1.v4.1 annot-version=v4.1 MADDMRGVVGYALLPKKQQSFIQDSLLSLCKSRGIDLVRIDQDRRLIDQGPFDCVLHKMYGDDWRKQLEEFQIQNPNSTIIDSPVSIQRLHNRISMLQAV SELKIESGTDTFGIPKQIVIYDKESLFDRQSWEFLKYPVIAKPLIADGSAKSHKMALVFNHEGLNKLKPPIVLQEFVNHGGVIFKVYVVGEFVKCVKRKS LPDVSEEKLKGLEGSLPFSQVSNLTSDERNDDKYYKLMDLEETELPPQSFITDIARGLRRGLKLNLFNFDVIRDARIGNRYLVIDINYFPGYAKMPGYET VLTDFFCDVVGKKSSSEEKEIGGVEKLQVVRNCDVDVTKIVSKTCCSDGED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Potri.003G094100 [exp]	0	1
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.001G229000 [exp]	10.63	0.8038
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Potri.003G192100 [exp]	15.49	0.7887
AT5G62680			Major facilitator superfamily ...		Potri.012G071400 [exp]	17.72	0.8009
AT5G36930			Disease resistance protein (TI...		Potri.001G066500 [exp]	25.78	0.7856
AT2G31955		CNX2	cofactor of nitrate reductase ...		Potri.009G024100 [exp]	44.36	0.7793	CNX2.1
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.003G064100 [exp]	48.37	0.7774
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170300 [exp]	51.02	0.7407
AT5G06800	GARP		myb-like HTH transcriptional r...		Potri.006G191000 [exp]	53.17	0.7707
AT1G26190			Phosphoribulokinase / Uridine ...		Potri.010G134400 [exp]	55.42	0.7304
AT1G70180			Sterile alpha motif (SAM) doma...		Potri.008G193300 [exp]	60.20	0.7104

Compare expression of checked genes

Potri.003G094100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.