Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57280 214 / 3e-70 Transmembrane proteins 14C (.1) AT3G20510 80 / 2e-19 Transmembrane proteins 14C (.1) AT1G50740 76 / 8e-18 Transmembrane proteins 14C (.1) AT2G38550 74 / 1e-15 Transmembrane proteins 14C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G139800 [exp] 350 / 5e-124 AT3G57280 172 / 5e-54 Transmembrane proteins 14C (.1) Potri.001G424000 [exp] 76 / 2e-17 AT1G50740 158 / 2e-51 Transmembrane proteins 14C (.1) Potri.011G138100 [exp] 69 / 6e-15 AT1G50740 128 / 1e-39 Transmembrane proteins 14C (.1) Potri.016G137200 [exp] 66 / 1e-12 AT2G38550 263 / 4e-86 Transmembrane proteins 14C (.1) Potri.006G108700 [exp] 63 / 2e-11 AT2G38550 275 / 7e-91 Transmembrane proteins 14C (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035434 [exp] 179 / 7e-54 AT2G43080 365 / 4e-125 P4H isoform 1 (.1) Lus10031047 [exp] 133 / 2e-37 AT3G57280 132 / 6e-37 Transmembrane proteins 14C (.1) Lus10019624 [exp] 80 / 4e-19 AT1G50740 177 / 8e-59 Transmembrane proteins 14C (.1) Lus10008541 [exp] 72 / 4e-16 AT1G50740 178 / 3e-59 Transmembrane proteins 14C (.1) Lus10025221 [exp] 50 / 5e-07 AT2G38550 203 / 2e-63 Transmembrane proteins 14C (.1) Lus10025137 [exp] 48 / 2e-06 AT2G38550 207 / 5e-65 Transmembrane proteins 14C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03647 [poplar] [flax] Tmemb_14 Transmembrane proteins 14C
Representative CDS sequence Show only first row Show all	>Potri.003G094300.1 pacid=42787054 polypeptide=Potri.003G094300.1.p locus=Potri.003G094300 ID=Potri.003G094300.1.v4.1 annot-version=v4.1 ATGGCAACAACATCAACAACAGCAACCTGTCAGCTTTCATGTTTCTCTTCTCTCAACCGCAGATTAAATCATCTACACCGTCGATCCATTCTCTCTCTTC CGCAGTCTCCTCGCTACAAGTCATGGGTGGTTGTGAGTAACGAAGGACATAATAATGGAGCACACTCTTTGACTTCAAATATCAAAACAAGTAGTACCGA TCATAACTATACAGCTCCTGAGGAAGATAAGGGAATCAGTGATCCAGTAAAGGGAGTATATGGGTCAGCGAAAATTCATGACTTTTGTTTTGGGATTCCT TTTGGTGGGATTGTTTTAAGTGGGGGGCTCATTGGTTTTGTGTTCTCAAAAAATGCTGTATCTTTAGGTACTGGTGTGTTGTATGGAGGTGCTTTGCTAG CACTCAGTACCTTCAGTTTGAAGATTTGGAGGCAAGGGAAATCAAGCTTTCCATTTGTACTTGGACAAGCTGTACTCGCAGCAGCCCTTTGCTGGAACAA CTTTCGGGCTTACTCATTGACAAAGAAGCTAATTCCAACAGGATTTTTTGCCGTCATTAGTGCTGCAATGCTGTGCTTTTATTCATATGTAATGATATCT GGAGGAAACCCACCACCAAAGAAGTTGCAGTCATCTGCTAGTGTCAGTTCATAA
AA sequence Show only first row Show all	>Potri.003G094300.1 pacid=42787054 polypeptide=Potri.003G094300.1.p locus=Potri.003G094300 ID=Potri.003G094300.1.v4.1 annot-version=v4.1 MATTSTTATCQLSCFSSLNRRLNHLHRRSILSLPQSPRYKSWVVVSNEGHNNGAHSLTSNIKTSSTDHNYTAPEEDKGISDPVKGVYGSAKIHDFCFGIP FGGIVLSGGLIGFVFSKNAVSLGTGVLYGGALLALSTFSLKIWRQGKSSFPFVLGQAVLAAALCWNNFRAYSLTKKLIPTGFFAVISAAMLCFYSYVMIS GGNPPPKKLQSSASVSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57280			Transmembrane proteins 14C (.1...		Potri.003G094300 [exp]	0	1
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Potri.012G125900 [exp]	3.00	0.8782
AT4G17830			Peptidase M20/M25/M40 family p...		Potri.001G143200 [exp]	6.00	0.8444
AT2G31670			Stress responsive alpha-beta b...		Potri.001G413500 [exp]	6.40	0.8819
					Potri.004G212550 [exp]	6.78	0.8782
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Potri.010G073700 [exp]	8.06	0.8719
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Potri.002G243700 [exp]	9.53	0.8716	Pt-EU3.1
					Potri.008G005500 [exp]	10.09	0.8717
AT1G11090			alpha/beta-Hydrolases superfam...		Potri.011G046500 [exp]	13.03	0.8471
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Potri.015G004000 [exp]	14.07	0.8332
AT1G30825		DIS2, ARPC2, AR...	DISTORTED TRICHOMES 2, ACTIN-R...		Potri.003G157700 [exp]	14.42	0.8576	Pt-ARPC2.1

Compare expression of checked genes

Potri.003G094300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.