Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25960 1999 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G10680 1919 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT3G28860 1274 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT1G27940 1217 / 0 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT1G28010 1190 / 0 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT2G36910 1184 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT2G47000 1065 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT1G02520 1053 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT4G01830 1052 / 0 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT3G62150 1043 / 0 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G139600 [exp] 2294 / 0 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G139700 [exp] 2045 / 0 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.017G081100 [exp] 1260 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.002G019600 [exp] 1217 / 0 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.016G093600 [exp] 1184 / 0 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.006G123900 [exp] 1181 / 0 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.014G113500 [exp] 1074 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.001G354900 [exp] 1064 / 0 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.002G187500 [exp] 1061 / 0 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004571 [exp] 1776 / 0 AT4G25960 1732 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10030674 [exp] 1249 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10005249 [exp] 1244 / 0 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10017271 [exp] 1222 / 0 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10017270 [exp] 1204 / 0 AT1G27940 1686 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10023929 [exp] 1201 / 0 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10009988 [exp] 1070 / 0 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10038049 [exp] 1068 / 0 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010067 [exp] 1065 / 0 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10009989 [exp] 1051 / 0 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.003G094400.1 pacid=42786887 polypeptide=Potri.003G094400.1.p locus=Potri.003G094400 ID=Potri.003G094400.1.v4.1 annot-version=v4.1 ATGAGTTCACTTGCAGGCAACATTGAAGACACTGATGATGTGGAAAAGAAGAAGGAAGAGAAAAAGAAGCAACGCAAAGTTCCATTCTGGAAACTATTTG CTTTTGCTGATTTCTACGACTATGTGTTAATGGGGTTGGGATCTCTTGGTGCTTGTGTTCATGGAGCTTCAGTCCCTGTCTTCTTCATTTTCTTTGGAAA GTTGATAAATATCATTGGATTGGCTTATCTCTTTCCCAAAGAAGCTTCTCATAGAGTAGGCAAGTACTCGTTGGATTTTGTATATCTCAGTGTGGTTATA TTATTCGCATCGTGGATAGAGGTGGCATGTTGGATGCATACTGGAGAAAGACAGGCAGCGAAGATGAGAATGGCCTATCTAAAATCAATGTTAAGTCAAG ATATAAGTTTATTCGATACTGAAGCATCAACCGGAGAGGTCATAGCTGCCATTACAAGTGATATAATTGTCGTGCAAGATGCTATTTCTGAAAAGGTTGG GAACTTCATGCACTATATAAGCCGATTTCTCGGTGGATTTATAATCGGGTTTGTTAGGATATGGCAAATCAGTCTGGTGACGCTGTCTATAGTCCCTTTA ATTGCACTTGCTGGTGGCATCTATGCTTATATAACAATCGGCCTTATTGCTAAAGTTCGTAAATCTTATGTCAAAGCAAGCCAAGTCGCTGAGGAGGTAA TTGGAAATGTTAGAACAGTACAAGCATTTACAGGGGAAGAGAAAGCAGTGAGGTCATATATAGAAGCTCTCAGGAAAACGTACAAGTATGGGAGGAAAGC AGGCCTGGCCAAGGGTCTTGGATTAGGAACCTTGCATTGTGTCCTTTTCCTATCATGGGCTTTGCTTGTATGGTACACTAGCATAGTTGTCCACAAGAAT ATTGCTAATGGTGGCGAATCTTTCACCACTATGCTCAATGTTGTTATTTCTGGCCTGTCACTGGGAATGGCTGCACCAGATATTTCATCATTTCTCCACG CCACAGCAGCAGCCTACCCTATTTTCGAGATGATAGAGAAGAACACGATGAGCAAAATCAGCTCAGAATCTGGTCGGAAGGTAGATAGAGTTGATGGCCA CATTGAATTCAAAGATGTGTGTTTTCGGTACCCTTCTCGTCCTGATGTAACAATCTTCGATAAATTCTGCTTAGATATCCCTTCTGGGAAGATTGTAGCC CTTGTCGGAGGAAGTGGGTCTGGAAAGAGCACGGTAATATCTTTGATCGAAAGATTCTATGATCCTTTGTTTGGAAAGATACTGTTAGATGGGAATGATA TTCGGGACCTTGACCTCAAGTGGCTTAGGCAGCAAATTGGGCTAGTTAATCAGGAGCCTGCTCTTTTTGCAACAAGCATCAGAGAGAACATTCTCTATGG GAAAGATGATGCCACCCTTGAGGAAATTACACGTGCTGCTAAACTTTCAGGAGCCATGTCTTTTATCAATAACCTCCCAGATAAATTTGAAACACAGGTT GGGGAAAGAGGAATTCAATTATCAGGCGGGCAAAAGCAAAGGATTGCATTATCACGTGCTATCGTGAAAAATCCATCCATTCTTTTGCTAGATGAAGCTA CAAGTGCACTGGATGCTGAATCTGAGAAAAGCGTGCAAGAGGCTATTGATCGTGCCATTGTTGGACGAACCACTGTAGTTGTGGCTCATCGGCTTTCTAC AATCAGGAATGCAGATGTCATTGCTGTGGTTCAGGAAGGGAAGATAGTAGAAATCGGGAGCCATGAGGAGCTCATTTCAAACCCTCAAAGTACCTATGCT TCCCTCGTCCATCTCCAGGAGGCAGCTTCCTTGCAGCGTCATCCCTCACATGGTCCTACCTTAGGACGACCACTCAGCATGAAGTATTCTCGAGAATTAT CCCACACAAGATCAAGCTTTGGAACAAGTTTTCATTCTGACAAGGATTCAGTTAGCCGGGTTGGTGGTGATGCTTTGGAGTCCACGAGGACAAAGAATGT TTCACTGAAAAGATTGTATTCAATGGTCGGCCCTGATTGGATTTATGGTGTACTTGGAACCATGGGTGCATTTATTGCCGGATCCGCAATGCCACTTTTT GCTCTTGGAGTCTCTCAAGCTCTTGTAGCCTACTACATGGACTGGGACACAACTCGCCATGAAGTCAAGAAGATTGCAATCCTGTTTTGTTGTGGTGCAG CAATTAGTGTTATTGTCTATGCCATTGAACATCTCTCTTTTGGAATCATGGGAGAGCGACTCACTCTTCGTGTCAGAGAAATGATGTTCTCTGCCATTTT GAAGAACGAGATTGGATGGTTTGATGATTTGAACAATACAAGTTCCATGCTCACATCACGTCTAGAGAGCGATGCAACTTTGTTACGAACTATAGTTGTT GATCGCTCAACCATTCTCTTGCAAAATGTTGGTTTGGTTGTCACCTCATTTATCATCGCCTTTACATTGAACTGGAGGATCACACTTGTTGTCATAGCCA CATATCCGCTGATCATTAGTGGTCACATAAGCGAGAAACTCTTTATGAAGGGCTATGGTGGCAACTTGAGTAAAGCATATCTAAAGGCTAACATGCTAGC TGGCGAGGCTGTGAGTAACATCCGCACTGTTGCTGCATTCTGTGCTGAAGAAAAGATACTTGACCTTTATGCCCGTGAGCTTGTCGAACCTTCCAAGAAC TCATTCACTCGTGGTCAGATCGCCGGCATATTCTATGGCATATGCCAGTTCTTCATTTTCTCATCTTATGGGCTTGCTTTATGGTATGGTTCTGTTCTGA TGGAGAAGGAGCTTGCTGGTTTTAAATCTATCATGAAGTCATTTATGGTTTTGATTGTAACTGCATTAGCCATGGGTGAAACTCTAGCATTGGCGCCAGA TCTTCTGAAAGGGAACCATATGGCAGCATCTGTCTTTGAGATACTGGATCGCAAGACACAGGTAATGGGGGATGTAGGAGAAGAGTTGAAAAATGTGGAG GGTACAATAGAGTTAAGAGGTGTCCAATTTAGCTATCCTTCAAGACCTGATGCATTGATTTTCAAAGACTTTGATCTAAGAGTGCGTTCAGGCAAGAGTA TGGCTTTAGTGGGACAAAGTGGTTCCGGTAAAAGCTCTGTCCTTTCTCTGATACTTCGTTTCTACGATCCAACAGCAGGAAAAGTGATGATTGATGGCAT AGATATCAAGGAACTCAAGGTGAAATCTCTTCGAAAGCACATAGGCCTAGTCCAACAAGAGCCAGCTCTCTTTGCCACATCAATCTATGAAAACATTTTA TATGGAAAAGAAGGAGCCTCCGAAGCAGAAGTTATTGAAGCGGCTAAGCTTGCTAATGCTCACAGTTTCATTAGCTCTCTTCCTGAGGGTTACTCAACCA AAGTTGGTGAACGAGGGGTGCAATTATCAGGTGGCCAAAAGCAAAGAGTGGCCATTGCCCGAGCCGTCCTAAAAAATCCAGAAATCTTGCTACTTGATGA AGCCACTAGTGCTCTAGATGTGGAGTCCGAGCGTATTGTGCAGCAAGCTCTGGACAGATTGATGAGGAACCGAACAACAGTGGTAGTGGCACATAGGTTA TCGACTATAAAGAATGCGGATCAAATATCAATTATACAAGAAGGAAAAATAATAGAGCAAGGGACTCATTCTAGTCTTGTTGAAAACAAAGACGGAGCAT ATTTCAAGCTGGTTCGTCTTCAGCAACAAGGAGGAGTTGAACAGAATCATTAA
AA sequence Show only first row Show all	>Potri.003G094400.1 pacid=42786887 polypeptide=Potri.003G094400.1.p locus=Potri.003G094400 ID=Potri.003G094400.1.v4.1 annot-version=v4.1 MSSLAGNIEDTDDVEKKKEEKKKQRKVPFWKLFAFADFYDYVLMGLGSLGACVHGASVPVFFIFFGKLINIIGLAYLFPKEASHRVGKYSLDFVYLSVVI LFASWIEVACWMHTGERQAAKMRMAYLKSMLSQDISLFDTEASTGEVIAAITSDIIVVQDAISEKVGNFMHYISRFLGGFIIGFVRIWQISLVTLSIVPL IALAGGIYAYITIGLIAKVRKSYVKASQVAEEVIGNVRTVQAFTGEEKAVRSYIEALRKTYKYGRKAGLAKGLGLGTLHCVLFLSWALLVWYTSIVVHKN IANGGESFTTMLNVVISGLSLGMAAPDISSFLHATAAAYPIFEMIEKNTMSKISSESGRKVDRVDGHIEFKDVCFRYPSRPDVTIFDKFCLDIPSGKIVA LVGGSGSGKSTVISLIERFYDPLFGKILLDGNDIRDLDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEEITRAAKLSGAMSFINNLPDKFETQV GERGIQLSGGQKQRIALSRAIVKNPSILLLDEATSALDAESEKSVQEAIDRAIVGRTTVVVAHRLSTIRNADVIAVVQEGKIVEIGSHEELISNPQSTYA SLVHLQEAASLQRHPSHGPTLGRPLSMKYSRELSHTRSSFGTSFHSDKDSVSRVGGDALESTRTKNVSLKRLYSMVGPDWIYGVLGTMGAFIAGSAMPLF ALGVSQALVAYYMDWDTTRHEVKKIAILFCCGAAISVIVYAIEHLSFGIMGERLTLRVREMMFSAILKNEIGWFDDLNNTSSMLTSRLESDATLLRTIVV DRSTILLQNVGLVVTSFIIAFTLNWRITLVVIATYPLIISGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCAEEKILDLYARELVEPSKN SFTRGQIAGIFYGICQFFIFSSYGLALWYGSVLMEKELAGFKSIMKSFMVLIVTALAMGETLALAPDLLKGNHMAASVFEILDRKTQVMGDVGEELKNVE GTIELRGVQFSYPSRPDALIFKDFDLRVRSGKSMALVGQSGSGKSSVLSLILRFYDPTAGKVMIDGIDIKELKVKSLRKHIGLVQQEPALFATSIYENIL YGKEGASEAEVIEAAKLANAHSFISSLPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERIVQQALDRLMRNRTTVVVAHRL STIKNADQISIIQEGKIIEQGTHSSLVENKDGAYFKLVRLQQQGGVEQNH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Potri.003G094400 [exp]	0	1
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Potri.015G039100 [exp]	2.44	0.9715
AT5G44680			DNA glycosylase superfamily pr...		Potri.001G074700 [exp]	3.31	0.9758
AT1G11670			MATE efflux family protein (.1...		Potri.011G002200 [exp]	6.48	0.9625
AT3G02500			unknown protein		Potri.017G112600 [exp]	8.00	0.9612
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Potri.002G180300 [exp]	8.48	0.9692
AT5G22430			Pollen Ole e 1 allergen and ex...		Potri.009G019300 [exp]	9.94	0.9611
AT2G46640			unknown protein		Potri.014G102600 [exp]	10.95	0.9601
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.013G119600 [exp]	11.22	0.9566
AT2G36430			Plant protein of unknown funct...		Potri.003G181600 [exp]	14.07	0.9553
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Potri.019G024400 [exp]	14.28	0.9648

Compare expression of checked genes

Potri.003G094400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.