Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TPS5.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17770 1441 / 0 ATTPS5 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) AT1G68020 1334 / 0 ATTPS6 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) AT1G06410 1186 / 0 ATTPSA, ATTPS7 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) AT1G23870 1186 / 0 ATTPS9 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) AT1G70290 1152 / 0 ATTPSC, ATTPS8 trehalose-6-phosphatase synthase S8 (.1) AT1G60140 1123 / 0 ATTPS10 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) AT2G18700 1068 / 0 ATTPSB, ATTPS11 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) AT1G16980 460 / 2e-149 ATTPS2 TREHALOSE -6-PHOSPHATASE SYNTHASE S2, trehalose-phosphatase/synthase 2 (.1) AT1G78580 452 / 5e-145 ATTPS1 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) AT1G17000 428 / 9e-138 ATTPS3 TREHALOSE -6-PHOSPHATASE SYNTHASE S3, trehalose-phosphatase/synthase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G139500 [exp] 1651 / 0 AT4G17770 1429 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.010G104500 [exp] 1375 / 0 AT1G68020 1415 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.008G136500 [exp] 1341 / 0 AT1G68020 1410 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.004G061500 [exp] 1213 / 0 AT1G06410 1286 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Potri.011G070900 [exp] 1212 / 0 AT1G06410 1343 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Potri.012G078500 [exp] 1179 / 0 AT1G23870 1284 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.015G074000 [exp] 1166 / 0 AT1G23870 1285 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.018G097700 [exp] 1071 / 0 AT2G18700 1118 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) Potri.006G175500 [exp] 1066 / 0 AT2G18700 1151 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034585 [exp] 1355 / 0 AT1G68020 1462 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10021805 [exp] 1335 / 0 AT1G68020 1452 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10030853 [exp] 1204 / 0 AT1G60140 1388 / 0.0 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) Lus10005425 [exp] 1186 / 0 AT1G06410 1338 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10007311 [exp] 1186 / 0 AT1G06410 1347 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10030635 [exp] 1184 / 0 AT1G60140 1367 / 0.0 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) Lus10015231 [exp] 1184 / 0 AT1G06410 1337 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10029258 [exp] 1180 / 0 AT1G06410 1338 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10012990 [exp] 1169 / 0 AT1G23870 1345 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Lus10029175 [exp] 1168 / 0 AT1G23870 1345 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00982 [poplar] [flax] Glyco_transf_20 Glycosyltransferase family 20 CL0137 [poplar] [flax] HAD PF02358 [poplar] [flax] Trehalose_PPase Trehalose-phosphatase
Representative CDS sequence Show only first row Show all	>Potri.003G094500.1 pacid=42785520 polypeptide=Potri.003G094500.1.p locus=Potri.003G094500 ID=Potri.003G094500.1.v4.1 annot-version=v4.1 ATGGTTTCAAGATCATATTCCAACCTCTTAGATCTTGCTTCTGGTGATGCTCCAAATTTTGGTCGTGAGAGGAAGAGGCTTCCTCGAGTGGCAACTGTTG CTGGGATACTGACTGATCTAGATGATGAAAACAGTGTTAGCTCTGATGCCCCCTCTTCTGTCTCTCAAGAACGGATGATTATTGTGGGAAACCAGCTTCC CCTTCGGGCACATCGAAGTCCAGATGGCAGTGGAGGGTGGTGCTTTAGCTGGGATGAGGACTCACTTCTCTTACAACTCAAAGATGGCCTTGGAGAAGAT GTTGAAGTTATCTATGTTGGTTCTCTTAAAGAAGAGATTGCACCTAGTGAGCAAGATGATGTAGCCCAAACATTGCTCGAAACTTTTAAATGTGTCCCGG CATTTATCCCTCCTGACCTTTTTTCTAAATTCTATCATGGATTCTGTAAACAACATCTGTGGCCTTTATTTCACTACATGCTCCCTTTATCACCAGATCT TGGTGGCCGGTTTGACAGGTCCCTTTGGCAAGCCTATGTTTCTGTTAACAAAATATTTGCAGACAAAGTTATGGAAGTGATTAGTCCTGACGATGATTAT GTGTGGGTTCATGACTACCATTTGATGGTTTTGCCAACATTTTTGAGGAAGAGATTTAATAGGGTGAAGCTTGGTTTCTTCCTCCACAGTCCATTCCCAT CTTCTGAAATATATAGGACACTTCCTGTAAGGGATGAACTTTTGAGAGCACTTCTCAACTCTGACCTCATTGGTTTTCATACCTTTGATTATGCAAGGCA CTTCCTCTCTTGTTGCAGTAGAATGCTCGGTCTTTCTTATCAATCTAAGCGAGGTTACATAGGGCTTGAGTATTATGGTCGGACAGTCAGCATCAAGATT CTCCCTGTTGGGATTCACATTGGTCAGCTTCAATCTGTGCTTAATCTTCCCGAGACAGAATCTAAGGTTACAGAGCTACATGATCGGTTTAGGGGTCAAA CTGTTATGCTAGGGGTTGATGACATGGACATCTTCAAAGGAATCAGCCTGAAACTTTTGGCCATGGAACAGTTGCTCACCCAACATCCTAATAAGAGGGG TGAAGTTGTTTTGGTTCAAATTGCAAACCCAGCAAGGGGCCGAGGAAGGGATGTACAGGAGGTCCAATCTGAAACCAAGGCTGCAGTGAGGAGGATTAAT GAGACATTTGGAAGTCCAGGATACACTCCAGTGGTTTTGATTGACAGCCCGCTACAGTTTTATGAGCGCATTGCTTATTACACAATTGCAGAGTGTTGTC TTGTTACAGCGGTGAGGGATGGGATGAATCTGATACCCTATGAATATATTATATGTCGACAAGGAAATGAGAAGCTGGATGAGACATTAGGATTAAACCC ATCAGCCCCAAGAAAGAGCATGCTGGTTGTTTCAGAGTTTATTGGATGCTCCCCATCACTAAGTGGGGCAATTCGAGTAAATCCATGGAATATTGATGCT GTAACTGAAGCCATGAATTCTGCCCTGATAGTCCCGGAGCCTGAAAAACAGATGCGACACGAGAAGCACCATAGGTATGTGAGTACGCATGATGTTGCAT ATTGGGCTCATAGTTTTTTGCAGGATCTTGAAAGGGCATGTAGGGATCATGTGAGGAGGAGGTGCTGGGGAATTGGTTTTGGTTTAGGTTTTCGAGTCAT TGCCTTGGATCCAAATTTCAGAAAACTTTCAGTTGAACATATTGTTTCTGCCTATAAGAGGACCAAAAACCGGGCTATTCTATTGGATTACGATGGTACT ATGATACTGCCAAGTTCAATTAGTAGGACTCCAAACATGGAGGCTGTTGGAGTCTTGAACAGCTTGTGTACAGACCCCAAGAATGTTGTTTTCCTTGTTA GTGGGAAAGACAGGGAAACTCTTACTGAATGGTTTTCTTCTTGTGAAAAGCTTGGAATTGCTGCAGAGCATGGTTATTTTATGAGGACCAATCATGATGT GGAATGGGAAACATGTGTGTCTGTACCAGATTTTGATTGGAAATGTATCGCTGATCCAGTAATGAAACTATACACTGAAACAACTGATGGTTCTTCCATT GAAACAAAAGAGAGTGCACTTGTTTGGAATTACCAGTATGCAGATCCAGATTTTGGTTCGTGCCAGGCTAAGGAGCTTCTAGATCATCTGGAAAGTGTTC TTGCCAATGAACCAGTTACTGTCAAGAGCGGTCAACACATTGTAGAGGTTAAACCTCAGGGGGTCAACAAAGGTCTGGTGGCCGAACGCCTCCTAGAAAT AATGAAACAGAAGGGAATGCTTCCCGATTTTGTTCTCTGCATTGGGGATGACCGGTCTGATGAGGACATGTTTGAGGTGATAATGAGTGCAAGATCTGGC CCCTCTCTTTCCCCAGTTGCTGAAGTGTTTGCATGCACTGTTGGCCGAAAACCCAGCAAGGCCAAGTACTATTTGGAAGACACATCCGAGATTTTGAGAA TGCTGCAAGGTCTTGCCAGTGCTTCGGAGCAGGTTGCTAGAAGTGCCCCCCAATCCTCTCAGCAAGTGATTATTGACAGAGAGTAA
AA sequence Show only first row Show all	>Potri.003G094500.1 pacid=42785520 polypeptide=Potri.003G094500.1.p locus=Potri.003G094500 ID=Potri.003G094500.1.v4.1 annot-version=v4.1 MVSRSYSNLLDLASGDAPNFGRERKRLPRVATVAGILTDLDDENSVSSDAPSSVSQERMIIVGNQLPLRAHRSPDGSGGWCFSWDEDSLLLQLKDGLGED VEVIYVGSLKEEIAPSEQDDVAQTLLETFKCVPAFIPPDLFSKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYVSVNKIFADKVMEVISPDDDY VWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYQSKRGYIGLEYYGRTVSIKI LPVGIHIGQLQSVLNLPETESKVTELHDRFRGQTVMLGVDDMDIFKGISLKLLAMEQLLTQHPNKRGEVVLVQIANPARGRGRDVQEVQSETKAAVRRIN ETFGSPGYTPVVLIDSPLQFYERIAYYTIAECCLVTAVRDGMNLIPYEYIICRQGNEKLDETLGLNPSAPRKSMLVVSEFIGCSPSLSGAIRVNPWNIDA VTEAMNSALIVPEPEKQMRHEKHHRYVSTHDVAYWAHSFLQDLERACRDHVRRRCWGIGFGLGFRVIALDPNFRKLSVEHIVSAYKRTKNRAILLDYDGT MILPSSISRTPNMEAVGVLNSLCTDPKNVVFLVSGKDRETLTEWFSSCEKLGIAAEHGYFMRTNHDVEWETCVSVPDFDWKCIADPVMKLYTETTDGSSI ETKESALVWNYQYADPDFGSCQAKELLDHLESVLANEPVTVKSGQHIVEVKPQGVNKGLVAERLLEIMKQKGMLPDFVLCIGDDRSDEDMFEVIMSARSG PSLSPVAEVFACTVGRKPSKAKYYLEDTSEILRMLQGLASASEQVARSAPQSSQQVIIDRE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17770		ATTPS5	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.003G094500 [exp]	0	1	Pt-TPS5.3
AT3G05500			Rubber elongation factor prote...		Potri.013G017300 [exp]	29.74	0.5239	SRPP.2
AT4G27220			NB-ARC domain-containing disea...		Potri.005G062130 [exp]	37.01	0.5033
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Potri.013G075300 [exp]	38.67	0.4972
AT1G69580	GARP		Homeodomain-like superfamily p...		Potri.008G087600 [exp]	54.44	0.4902
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Potri.011G055224 [exp]	67.64	0.4460
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Potri.012G024700 [exp]	75.52	0.4456
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.001G241700 [exp]	83.07	0.4558
AT3G07890			Ypt/Rab-GAP domain of gyp1p su...		Potri.014G163400 [exp]	126.85	0.4352
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Potri.004G099100 [exp]	136.45	0.4167	DIN9.2
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Potri.006G221301 [exp]	231.00	0.3778

Compare expression of checked genes

Potri.003G094500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.