Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 763 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 666 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 379 / 4e-122 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 378 / 5e-122 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 375 / 1e-120 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 371 / 3e-119 RLK receptor lectin kinase (.1) AT5G06740 370 / 5e-119 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 366 / 2e-117 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 366 / 3e-117 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 358 / 4e-114 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G004500 [exp] 875 / 0 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004300 [exp] 856 / 0 AT5G10530 743 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004400 [exp] 840 / 0 AT5G10530 738 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 684 / 0 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 614 / 0 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 613 / 0 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 611 / 0 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 605 / 0 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 605 / 0 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004277 [exp] 877 / 0 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 845 / 0 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016836 [exp] 696 / 0 AT3G16810 761 / 0.0 pumilio 24 (.1) Lus10016833 [exp] 679 / 0 AT5G10530 575 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029553 [exp] 658 / 0 AT5G10530 591 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029554 [exp] 654 / 0 AT5G10530 590 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 572 / 0 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 553 / 0 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020456 [exp] 538 / 0 AT5G10530 519 / 1e-176 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 528 / 4e-180 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.003G094700.1 pacid=42786001 polypeptide=Potri.003G094700.1.p locus=Potri.003G094700 ID=Potri.003G094700.1.v4.1 annot-version=v4.1 ATGTTACATATCAGTATGTTGCTCATCAACTGCTTGTTACTTGTGTCCTCCAATTCTCTCTCTCTCACCATGGCCACCTCTTTCTACAGTTTCCAAACTT TGAATCTCTATGTCATTTCCTTCCTGCTGCTGCTTCTTCCACCCTCTGCTAATTCAATTTCCTTTCAAAGAACACGATTTGACCCTAGTGACACCAACAT AATCTATGAGGGAGGTGCATCAACTCATGTTGGAAGCATTGAATTCAATAGTGACACTTATATGTGTCAAGTTGGTCGAGCCACTTACGCCAAGAAGGTG CCTCTCTGGGACTCTTCCACTACAAGGCTGACCGACTTCAGTACCCATTTCTCTTTTTACATCGACATTGAAGGTCGTACTTCTTATGCAGCCGGATTTG CTTTCTTCATCGCTCCTGTTGAGTTTCACATACCCCCGAATTCAGCAGGAGGTTTTCTAGGCTTATATAACATCACCACTAGTGACTCTCCACAGAACCA TATTGTCCACATTGAATTTGATTCTTTTGCGAATCCTGAATGGGATCCTCCAATTCAAAATGTTGGGATCAACAACAACTCAGTTTCCTCGGCCACATAC ACCTATTGGAATACCTCCTTGCACAGCGGCGATACTGCTGATGTGCGGGTCACTTATAACTCCACTACAAAGAATCTGACGGTTTCTTGGAAGTATCAGA CAACTTCATCTCCTCAAGAGAATACAAGTCTTTCCTACATTATTGATCTCAGGGAGGTTCTTCCTGAGTGGGTCACGATTGGGTTTACAGCTGCTACTAG TAACCTTATAGAGCGGCATGTGCTTCACTCATGGGACTTCAGTTCTACCCTGGAGATGAGTGAAACAAGCGGAAAGAGTGCTAAAAATATAAAACTCGTG GTGAGTCTGACAGTTTCAGGAGCTGTTTTGATTATTGTGATTGCTGTAGTATCTGGAATTTTGTGGAGACGGAAGTTGGTAAGGAAGGAAACAGCGGAGA CGGTGAACTTAACATCAATCAACGATGACCTTGAAAGGCGTGCTGGTCCTAGAAGATTTTCCTATAAAGATCTTGTTTCAGCTACCAACAACTTCTCTGC TGAGAGGAAGTTAGGGGAAGGAGGGTTTGGAGCTGTTTACCAAGGGCAATTGACTGGTATAGATACGGCAGTTGCTGTGAAAAAAATCTCAAGAGGTTCG AAACAGGGGAAAAAGGAATACGTAACTGAGGTGAAGGTCATTAGCCAGTTGAGGCATCGGAATCTAGTGCAACTCATAGGTTGGTGTCATGATAGAGGTG AGTTCCTACTTGTCTATGAATTCATGTCAAATGGTAGCCTTGATTCTCACCTTTTTGGTAAGAAGATTCCTCTCACATGGACAGCAAGATACAGAATAGC TCTTGGATTGGCCTCTGCTTTGCTTTATCTTCATGAAGAGTGGGAACAATGTGTGGTGCATCGCGATGTAAAATCAAGCAACATAATGCTCGATTCAAGT TTTAATGTCAAGCTCGGTGATTTTGGGCTAGCTCGACTCATGGACCATGAGCTAGGTCCGCAGACTACAGGTTTGGCAGGAACTCTAGGCTATTTGGCTC CGGAATATATAAGCACAGGTCGAGCTAGCAAGGAGTCTGATGTATATAGTTTTGGCATGGTTTCTCTAGAGATTGCTACTGGAAGAAAAGCAGTTGATGC CATTGAACAGAAATCAGAAATGAGCTTGGTAGAGTGGATTTGGGATCTTTATGGAACTGGAAAACTCAACTTGGCTGTTGATGAGAAACTTCAGTCTGAA TTTGATGAGAATCAAATGGAGTGCTTGATGATTGTTGGGTTGTGGTGTGCTCACCCTGATCGCAATATAAGACCCTCGATAAGGCAGGCAATTCATGTTC TTAACTTTGAAGCACCATTACCAAATCTTCCCACAAAGATGCCTGTTCCTCTGTATCATGTGCCTACACCACCGCTTAGCTCCGGTGAGCCCTTGATATC GCACTCAATGGATGTGGGTCGTTAA
AA sequence Show only first row Show all	>Potri.003G094700.1 pacid=42786001 polypeptide=Potri.003G094700.1.p locus=Potri.003G094700 ID=Potri.003G094700.1.v4.1 annot-version=v4.1 MLHISMLLINCLLLVSSNSLSLTMATSFYSFQTLNLYVISFLLLLLPPSANSISFQRTRFDPSDTNIIYEGGASTHVGSIEFNSDTYMCQVGRATYAKKV PLWDSSTTRLTDFSTHFSFYIDIEGRTSYAAGFAFFIAPVEFHIPPNSAGGFLGLYNITTSDSPQNHIVHIEFDSFANPEWDPPIQNVGINNNSVSSATY TYWNTSLHSGDTADVRVTYNSTTKNLTVSWKYQTTSSPQENTSLSYIIDLREVLPEWVTIGFTAATSNLIERHVLHSWDFSSTLEMSETSGKSAKNIKLV VSLTVSGAVLIIVIAVVSGILWRRKLVRKETAETVNLTSINDDLERRAGPRRFSYKDLVSATNNFSAERKLGEGGFGAVYQGQLTGIDTAVAVKKISRGS KQGKKEYVTEVKVISQLRHRNLVQLIGWCHDRGEFLLVYEFMSNGSLDSHLFGKKIPLTWTARYRIALGLASALLYLHEEWEQCVVHRDVKSSNIMLDSS FNVKLGDFGLARLMDHELGPQTTGLAGTLGYLAPEYISTGRASKESDVYSFGMVSLEIATGRKAVDAIEQKSEMSLVEWIWDLYGTGKLNLAVDEKLQSE FDENQMECLMIVGLWCAHPDRNIRPSIRQAIHVLNFEAPLPNLPTKMPVPLYHVPTPPLSSGEPLISHSMDVGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10530			Concanavalin A-like lectin pro...		Potri.003G094700 [exp]	0	1
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Potri.014G056800 [exp]	1.41	0.8285
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Potri.004G019366 [exp]	3.74	0.8225
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Potri.010G069000 [exp]	6.24	0.8108
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Potri.010G023600 [exp]	8.00	0.7939
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G006800 [exp]	8.48	0.7275
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Potri.010G023550 [exp]	9.21	0.7858
AT2G18960		OST2, PMA, AHA1	PLASMA MEMBRANE PROTON ATPASE,...		Potri.018G090300 [exp]	9.48	0.7461	Pt-VHA2.2
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Potri.004G019800 [exp]	10.19	0.7772
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.007G120900 [exp]	11.95	0.7662
AT5G37730			unknown protein		Potri.004G089700 [exp]	12.48	0.7004

Compare expression of checked genes

Potri.003G094700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.